Luca Pireddu posted a comment on discussion Help

Hi, MAP_POPULATE has been supported in Linux since 2.5.46, so it's odd that you get that error. Try man mmap on your system and make sure that it supports that flag. Also, make sure you have the libc development package installed. I should also point out that Seal hasn't been developed in a number of years so it's likely out of date with the current versions of its dependencies. I just tried to reproduce your error by compiling the version you're using; I couldn't reproduce the same error, but I...

AnChiehFeng posted a comment on discussion Help

<meta content="text/html; charset=us-ascii" http-equiv="Content-Type"><meta content="text/html; charset=us-ascii" class="" http-equiv="Content-Type">Dear developers,I am installing Seal with Lunix, however, I got the error message that I couldn't solve. Can you please help me out? Thank you so much!Sincerely,An-Chiehstsmprol:seal-0.4.0-rc2 stephensmale$ python setup.py buildrunning buildUsing hadoop-bam in /Volumes/DataDrive/Hadoop-BAM-<wbr class=""></wbr>master/target/hadoop-bam-8.0.<wbr class=""></wbr>0-SNAPSHOT-jar-with-<wbr...

AnChiehFeng posted a comment on discussion Help

Dear developers, I am installing Seal in Lunix, however, I got the error message that I couldn't solve. Can you please help me out? Thank you so much! Sincerely, An-Chieh stsmprol:seal-0.4.0-rc2 stephensmale$ python setup.py build running build Using hadoop-bam in /Volumes/DataDrive/Hadoop-BAM-master/target/hadoop-bam-8.0.0-SNAPSHOT-jar-with-dependencies.jar Unable to set version from git running build_py copying seal/version.py -> build/lib/seal running build_scripts gcc -c -fPIC -Wall -O3 -m64...

Shantanu Shamraj posted a comment on discussion Help

Hello , When I am trying to run seal seqal it is giving error: Traceback (most recent call last): File "/opt/hadoop_tmp/nm-local-dir/usercache/hadoop/appcache/application_1516267048070_0017/container_1516267048070_0017_01_000005/seqal_bin.ETbCDn0.635801385589", line 13, in <module> run_task() File "/usr/local/lib/python2.7/site-packages/seal/seqal/init.py", line 31, in run_task return runTask(Factory(mapper, reducer)) File "/usr/local/lib/python2.7/site-packages/pydoop/pipes.py", line 263, in runTask...

Seal released /0.4/seal-0.4.0-rc1.tar.gz

Seal released /seal-0.4.0-rc2.tar.gz

Peng posted a comment on discussion Help

Hi there, I tried to build Seal and run it on Hadoop 2.0. I saw from the Installing...

Luca Pireddu posted a comment on discussion Help

ImportError: No module named Bio.SeqIO It looks like you need to install BioPython....

Peng posted a comment on discussion Help

Hi there, I tried building Seal on Ubuntu 13.10 and I think that I successfully built...

Seal released /0.3/seal-0.3.2-src.tar.gz

Seal released /seal-0.4.0-rc1.tar.gz

Jitendra posted a comment on discussion Help

Please can you give me path for such fastq file?

Luca Pireddu posted a comment on discussion Help

Sure there is. The installation procedure you should produce an archive that contains...

Jitendra posted a comment on discussion Help

I am running in same directory where I have installed seal. There is no such libbwa.so...

Luca Pireddu posted a comment on discussion Help

Is the file there and is it readable? You may be trying to run the files in the source...

Luca Pireddu posted a comment on discussion Help

Maybe all the reads are unpaired?

Jitendra posted a comment on discussion Help

I was running following command for step "Preparing the reference index archive"...

Jitendra posted a comment on discussion Help

I was running following command of prq tool of seal. It gave 100% completion of map-reduce...