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I am looking for the abbreviation definition corpus. Where can I find it?

Currently we have made available four abbreviation definition corpora for biomedical literature, described in Islamaj Dogan et al. 2014:

  1. S&H corpus, 1000 PubMed abstracts, 979 Abbreviation definitions, Download BioC corpus.
  2. Ab3P corpus, 1250 PubMed abstracts, 1223 definitions, Download BioC corpus.
  3. BioADI, 1201 PubMed abstracts, 1720 definitions, Download BioC corpus.
  4. MEDSTRACT, 199 PubMed abstracts, 159 definitions, Download BioC corpus. ... read more
Posted by Rezarta 2014-06-10 Labels: BioC corpora

I am looking for BioC-PMC corpus. Where can I find it?

The BioC-PMC corpus, which has been described in Islamaj Dogan et al., can be downloaded from this FTP website.

The corpus is separated into 4 files, and can be found in both ASCII and UNICODE versions.

The "pmc.key" file details all the tags that are used in this corpus. ... read more

Posted by Rezarta 2014-06-02

I am looking for BioC SWIG implementation. Where can I find it?

BioC SWIG implementation can be found in this package:
BioC_SWIG.

This includes BioC-SWIG-Python and BioC-SWIG-Perl.

More details on what is included in the package, installation and sample test programs are found in the ReadMe file.

Posted by Rezarta 2014-05-16 Labels: BioC-SWIG BioC-Python BioC-Perl I am looking for

I am looking for BioC JAVA implementation. Where can I find it?

BioC Java implementation can be found in this package:
BioC_Java_1.0.

In addition
BioCPreprocessingJavaPipeline contains the BioC adaptation of the Stanford tool set for basic NLP preprocessing. ... read more

Posted by Rezarta 2014-05-16 Labels: BioC Java I am looking for

I am looking for BioC C++ implementation. Where can I find it?

BioC C++ implementation has currently two versions in the download section:
BioC_C++_1.0 and
BioC_C++_1.1

Details on what is included in each package, installation and sample test programs are found in the respective ReadMe files of each package. ... read more

Posted by Rezarta 2014-05-16 Labels: BioC C++ I am looking for