bio2rdf-svncommits Mailing List for bio2rdf (Page 18)
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From: <p_a...@us...> - 2009-06-22 06:56:43
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Revision: 568
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=568&view=rev
Author: p_ansell
Date: 2009-06-22 06:56:41 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
fix up incorrect profiles on rdf rules and incorrect URI's on mquter database providers
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
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From: <p_a...@us...> - 2009-06-22 06:44:32
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Revision: 567
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=567&view=rev
Author: p_ansell
Date: 2009-06-22 06:44:30 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
make process happen, although there are still some bugs with the application of the rdf rules
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-06-22 06:35:23
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Revision: 566
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=566&view=rev
Author: p_ansell
Date: 2009-06-22 06:35:21 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
take away some more calls to Settings to get redundant profile entries
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
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From: <p_a...@us...> - 2009-06-22 06:34:16
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Revision: 565
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=565&view=rev
Author: p_ansell
Date: 2009-06-22 06:34:14 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
add missing links with profile list etc
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
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From: <p_a...@us...> - 2009-06-22 06:29:49
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Revision: 564
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=564&view=rev
Author: p_ansell
Date: 2009-06-22 06:29:48 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
partially put profiles into the mix so they can be utilised with Rdf Rules at the applicable stages
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/Profile.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
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From: <p_a...@us...> - 2009-06-22 04:10:42
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Revision: 563
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=563&view=rev
Author: p_ansell
Date: 2009-06-22 04:10:41 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
take the ruletest rdf triples out as they are no longer used or needed
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
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From: <p_a...@us...> - 2009-06-22 04:01:58
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Revision: 562
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=562&view=rev
Author: p_ansell
Date: 2009-06-22 04:01:57 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
add ruletest for the hash to colon normalisation rule
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-ruletests-config.n3
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From: <p_a...@us...> - 2009-06-22 04:00:13
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Revision: 561
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=561&view=rev
Author: p_ansell
Date: 2009-06-22 04:00:12 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
fix ruletests so automated testing works once again
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-ruletests-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RuleTest.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
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From: <p_a...@us...> - 2009-06-22 03:22:13
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Revision: 553
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=553&view=rev
Author: p_ansell
Date: 2009-06-22 01:55:17 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
remove test URI's from provider configurations, as they were not well thought through in the first place anyway and wouldn't actually be suitable without a reliance on a particular query type or at least a query string and a set of possible query types to match against
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2009-06-22 03:22:12
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Revision: 554
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=554&view=rev
Author: p_ansell
Date: 2009-06-22 02:06:34 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
remove testuri from the providerconfiguration implementation
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
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From: <p_a...@us...> - 2009-06-22 03:22:11
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Revision: 552
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=552&view=rev
Author: p_ansell
Date: 2009-06-22 01:43:57 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
some more cleanup
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-06-22 03:06:29
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Revision: 560
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=560&view=rev
Author: p_ansell
Date: 2009-06-22 03:06:25 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
take test URI's out of RdfNormalisationRule class and make a one to many relationship between RuleTest and RdfNormalisationRule
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RuleTest.java
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From: <p_a...@us...> - 2009-06-22 02:48:42
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Revision: 559
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=559&view=rev
Author: p_ansell
Date: 2009-06-22 02:48:41 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
update rules
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
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From: <p_a...@us...> - 2009-06-22 02:35:39
|
Revision: 558
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=558&view=rev
Author: p_ansell
Date: 2009-06-22 02:35:38 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
fix some more places where namesapce uri's weren't fixed by previous commits
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp
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From: <p_a...@us...> - 2009-06-22 02:28:46
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Revision: 557
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=557&view=rev
Author: p_ansell
Date: 2009-06-22 02:28:45 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
commit changes to the standard URI for the other related files
Modified Paths:
--------------
trunk/src/util/perl/affymetrix2n3.pl
trunk/src/util/perl/bio-tab2rdf.pl
trunk/src/util/perl/elmo.pl
trunk/src/util/perl/flybase-rdf2rdf.pl
trunk/src/util/perl/freebase2n3.pl
trunk/src/util/perl/go2n3.pl
trunk/src/util/perl/hgnc-csv2rdf.pl
trunk/src/util/perl/homologene2n3.pl
trunk/src/util/perl/homologene2rdf.pl
trunk/src/util/perl/iproclass2n3.pl
trunk/src/util/perl/ligand-file2rdf.pl
trunk/src/util/perl/mgi2n3.pl
trunk/src/util/perl/mysql2sesame.pl
trunk/src/util/perl/namespace2rdf.pl
trunk/src/util/perl/obo-type2n3.pl
trunk/src/util/perl/prosite-biopatml2rdf.pl
trunk/src/util/perl/regulondb-virtuoso.pl
trunk/src/util/perl/unists2n3.pl
trunk/src/util/python/ecocyc-dnabindsites2rdf.py
trunk/src/util/python/ecocyc-genelinks2rdf.py
trunk/src/util/python/ecocyc-genes2rdf.py
trunk/src/util/python/ecocyc-load-commands.txt
trunk/src/util/python/ecocyc-pathways2rdf.py
trunk/src/util/python/ecocyc-promoters2rdf.py
trunk/src/util/python/ecocyc-proteinfeatures2rdf.py
trunk/src/util/python/ecocyc-proteins2rdf.py
trunk/src/util/python/ecocyc-regulation2rdf.py
trunk/src/util/python/ecocyc-regulons2rdf.py
trunk/src/util/python/ecocyc-transunits2rdf.py
trunk/src/util/python/sideeffects-adverseeffects2rdf.py
trunk/src/util/python/sideeffects-labels2rdf.py
trunk/src/util/sparql/biopax-db.sparql
trunk/src/util/sparql/biopax2xref.sparql
trunk/src/util/sparql/obo-uri.sparql
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-ruletests-config.n3
trunk/src/war/WEB-INF/src/bio2rdf_basic_from_uri.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ecocyc_pr_tr_co_in_bi_ci_mesh.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ecocyc_promoter_transcriptionunits.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ecocyc_promoter_transcriptionunits_components.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ecocyc_promoter_transcriptionunits_components_involvedinregulations.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ecocyc_promoter_transcriptionunits_components_involvedinregulations_bindingsites.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ecocyc_promoter_transcriptionunits_components_involvedinregulations_bindingsites_citations.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ecocyc_regulators.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ecocyc_regulators_citations.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ecocyc_regulators_citations_short.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ncbigi.pipe
trunk/src/war/WEB-INF/src/bio2rdf_transform_uri_rdfxml.pipe
trunk/src/war/WEB-INF/src/bio2rdf_transform_uri_rdfxml_linksns_style.pipe
trunk/src/war/WEB-INF/src/bio2rdf_transform_uri_rdfxml_linkstonamespace_style.pipe
trunk/src/war/WEB-INF/src/bio2rdf_uri_rank.pipe
trunk/src/war/WEB-INF/src/bio2rdf_uri_rank_from_uri.pipe
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/bio2rdf.owl
trunk/src/war/bio2rdfpipes.jsp
trunk/src/war/biopatml.owl
trunk/src/war/biopax.owl
trunk/src/war/demo.rdf
trunk/src/war/sitemap.xml
trunk/src/war/xsl-sources/bind.xsl
trunk/src/war/xsl-sources/biopatml.xsl
trunk/src/war/xsl-sources/geneid.xsl
trunk/src/war/xsl-sources/pubchem.xsl
trunk/src/war/xsl-sources/pubmed.xsl
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From: <p_a...@us...> - 2009-06-22 02:24:32
|
Revision: 556
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=556&view=rev
Author: p_ansell
Date: 2009-06-22 02:24:30 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
change all term URI's from http://bio2rdf.org/ns/namespace# to http://bio2rdf.org/ns/namespace: so that every term can be individually resolvable if necessary as opposed to the hash versions where you can't easily resolve each term because the user-agent cuts off the URI at the # hash fragment identifier before performing the resolution
Modified Paths:
--------------
trunk/src/war/jsp-bio2rdf/bio2rdf-demo.rdf
trunk/src/war/jsp-bio2rdf/bio2rdf-header2rdf.jsp
trunk/src/war/jsp-bio2rdf/biopax-xref2rdf.jsp
trunk/src/war/jsp-bio2rdf/biopax2bpl-v1.jsp
trunk/src/war/jsp-bio2rdf/biopax2bpl.jsp
trunk/src/war/jsp-bio2rdf/construct-synonyme2rdf.jsp
trunk/src/war/jsp-bio2rdf/crossref-openurldoi2rdf.jsp
trunk/src/war/jsp-bio2rdf/ensembl-g2rdf.jsp
trunk/src/war/jsp-bio2rdf/ensembl-p2rdf.jsp
trunk/src/war/jsp-bio2rdf/ensembl-t2rdf.jsp
trunk/src/war/jsp-bio2rdf/gdb-http2bio2rdf.jsp
trunk/src/war/jsp-bio2rdf/go-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/hugo-http2bio2rdf.jsp
trunk/src/war/jsp-bio2rdf/kegg-composite2rdf.jsp
trunk/src/war/jsp-bio2rdf/kegg-kgml2rdf.xsl
trunk/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/lsid-sameas2rdf.jsp
trunk/src/war/jsp-bio2rdf/mysql2statistics.rdf
trunk/src/war/jsp-bio2rdf/ncbi-entrez2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-genbank2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-geneid2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-gi-genbank2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-map-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-mesh-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-omim2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-pubchem2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-pubmed2rdf.jsp
trunk/src/war/jsp-bio2rdf/obo2rdf.jsp
trunk/src/war/jsp-bio2rdf/pdb-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/reactome-taxon-all-http2seealso.jsp
trunk/src/war/jsp-bio2rdf/reactome-taxon-http2seealso.jsp
trunk/src/war/jsp-bio2rdf/reactome-xref2rdf.jsp
trunk/src/war/jsp-bio2rdf/reactome2bio2rdf.jsp
trunk/src/war/jsp-bio2rdf/sindice-search2rdf.jsp
trunk/src/war/jsp-bio2rdf/swoogle-search2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-header2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-keyword-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-rdf2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp
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From: <p_a...@us...> - 2009-06-22 02:14:34
|
Revision: 555
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=555&view=rev
Author: p_ansell
Date: 2009-06-22 02:10:23 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
add keywords to other jsp files
Property Changed:
----------------
trunk/src/war/jsp-bio2rdf/bio2rdf-header2rdf.jsp
trunk/src/war/jsp-bio2rdf/biocarta-all-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/biocarta-category-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/biocarta-pathway-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/biopax-xref2rdf.jsp
trunk/src/war/jsp-bio2rdf/biopax2bpl-v1.jsp
trunk/src/war/jsp-bio2rdf/biopax2bpl.jsp
trunk/src/war/jsp-bio2rdf/construct-synonyme2rdf.jsp
trunk/src/war/jsp-bio2rdf/crossref-openurldoi2rdf.jsp
trunk/src/war/jsp-bio2rdf/ensembl-g2rdf.jsp
trunk/src/war/jsp-bio2rdf/ensembl-p2rdf.jsp
trunk/src/war/jsp-bio2rdf/ensembl-t2rdf.jsp
trunk/src/war/jsp-bio2rdf/fulltext2rdf.jsp
trunk/src/war/jsp-bio2rdf/gdb-http2bio2rdf.jsp
trunk/src/war/jsp-bio2rdf/go-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/hugo-http2bio2rdf.jsp
trunk/src/war/jsp-bio2rdf/kegg-composite2rdf.jsp
trunk/src/war/jsp-bio2rdf/kegg-kgml2rdf.jsp
trunk/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp
trunk/src/war/jsp-bio2rdf/lsid-sameas2rdf.jsp
trunk/src/war/jsp-bio2rdf/mesh-nih2rdf.jsp
trunk/src/war/jsp-bio2rdf/mesh2rdf.jsp
trunk/src/war/jsp-bio2rdf/namespacecounts.jsp
trunk/src/war/jsp-bio2rdf/ncbi-entrez2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-genbank2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-geneid2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-gi-genbank2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-map-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-mesh-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-omim2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-pubchem2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-pubmed2rdf.jsp
trunk/src/war/jsp-bio2rdf/obo-xref2rdf.jsp
trunk/src/war/jsp-bio2rdf/obo2rdf.jsp
trunk/src/war/jsp-bio2rdf/pdb-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/reactome-taxon-all-http2seealso.jsp
trunk/src/war/jsp-bio2rdf/reactome-taxon-http2seealso.jsp
trunk/src/war/jsp-bio2rdf/reactome-xref2rdf.jsp
trunk/src/war/jsp-bio2rdf/reactome2bio2rdf.jsp
trunk/src/war/jsp-bio2rdf/search-rdfdata.jsp
trunk/src/war/jsp-bio2rdf/search-v1.jsp
trunk/src/war/jsp-bio2rdf/search.jsp
trunk/src/war/jsp-bio2rdf/sindice-search2rdf.jsp
trunk/src/war/jsp-bio2rdf/swoogle-search2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-header2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-keyword-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-rdf2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/wsdl-authority.jsp
trunk/src/war/jsp-bio2rdf/wsdl-service.jsp
trunk/src/war/jsp-bio2rdf/wsdl-service2rdf.jsp
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From: <p_a...@us...> - 2009-06-22 01:22:24
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Revision: 549
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=549&view=rev
Author: p_ansell
Date: 2009-06-22 01:01:59 +0000 (Mon, 22 Jun 2009)
Log Message:
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more refactoring to turn Settings.CONSTANT into URI's where possible to improve the RDF configuration format
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/HttpUrlQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/debug-configuration.jsp
trunk/src/war/multifetch.jsp
trunk/src/war/namespaceproviders.jsp
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From: <p_a...@us...> - 2009-06-22 01:09:27
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Revision: 551
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=551&view=rev
Author: p_ansell
Date: 2009-06-22 01:09:26 +0000 (Mon, 22 Jun 2009)
Log Message:
-----------
delete extraneous comment lines from RDF configuration files
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-ruletests-config.n3
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From: <p_a...@us...> - 2009-06-21 05:15:25
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Revision: 548
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=548&view=rev
Author: p_ansell
Date: 2009-06-21 05:15:24 +0000 (Sun, 21 Jun 2009)
Log Message:
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do lots of refactoring before the release, including making up URI's for the two include/exclude order possibilities so far
Modified Paths:
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trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Profile.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
trunk/src/war/debug-configuration.jsp
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From: <p_a...@us...> - 2009-06-21 03:06:38
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Revision: 547
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=547&view=rev
Author: p_ansell
Date: 2009-06-21 03:06:37 +0000 (Sun, 21 Jun 2009)
Log Message:
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add configuration api version information to the /admin/configuration URL's so that in future people can select the API they can use and the software may be able to translate its current version back to that version
Modified Paths:
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trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
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From: <p_a...@us...> - 2009-06-18 23:47:33
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Revision: 546
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=546&view=rev
Author: p_ansell
Date: 2009-06-18 23:47:31 +0000 (Thu, 18 Jun 2009)
Log Message:
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add pragma instruction to make insertion into virtuoso consistent and not break other queries by keeping locks for too long
Modified Paths:
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trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
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From: <p_a...@us...> - 2009-06-17 23:53:27
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Revision: 545
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=545&view=rev
Author: p_ansell
Date: 2009-06-17 23:52:05 +0000 (Wed, 17 Jun 2009)
Log Message:
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fix up taxonomy provider so it returns information now that it has been reloaded with standard normalised URI's instead of db.bio2rdf.org/db: etc URI's
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2009-06-17 22:47:38
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Revision: 544
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=544&view=rev
Author: p_ansell
Date: 2009-06-17 22:46:27 +0000 (Wed, 17 Jun 2009)
Log Message:
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add bind entries
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2009-06-17 22:25:23
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Revision: 543
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=543&view=rev
Author: p_ansell
Date: 2009-06-17 22:25:11 +0000 (Wed, 17 Jun 2009)
Log Message:
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make /sparql redirect to quebec.bio2rdf.org/sparql so people don't find a deadend
Modified Paths:
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trunk/src/war/WEB-INF/urlrewrite.xml
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