bio2rdf-bugs Mailing List for bio2rdf
Brought to you by:
fbelleau,
vincentemonet
Menu
▾
▴
bio2rdf-bugs — Mailing list for bug notifications, receives tracker item notifications
You can subscribe to this list here.
| 2009 |
Jan
|
Feb
(1) |
Mar
(2) |
Apr
(1) |
May
|
Jun
(63) |
Jul
(95) |
Aug
(17) |
Sep
(20) |
Oct
(1) |
Nov
(1) |
Dec
(1) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2010 |
Jan
|
Feb
|
Mar
(2) |
Apr
(2) |
May
(3) |
Jun
|
Jul
|
Aug
|
Sep
(3) |
Oct
|
Nov
(1) |
Dec
|
| 2011 |
Jan
|
Feb
|
Mar
|
Apr
|
May
|
Jun
(28) |
Jul
|
Aug
(2) |
Sep
|
Oct
|
Nov
|
Dec
|
|
From: SourceForge.net <no...@so...> - 2011-08-03 11:04:56
|
Support Requests item #3385405, was opened at 2011-08-03 18:34 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814190&aid=3385405&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed Priority: 5 Private: No Submitted By: Joerg Kurt Wegner (wegner) Assigned to: Nobody/Anonymous (nobody) Summary: Maintenance and development timelines Initial Comment: I have a maintenance and development timeline question. Can you please list all integrated data sources with their current date and version, especially when data sources were updated the last time. I found a comment on the W3C mailing list, still this is not sufficient for getting a "maintenance feeling". http://lists.w3.org/Archives/Public/public-semweb-lifesci/2011Jul/0000.html What is the general strategy with respect to the Chembl data set, I appreciate the various versions out there and @Egon, can you ensure regular update cycles and will Bio2RDF ensure that, too? Would it not be better that the group of John Overington is publishing regular updates as part of their regular releases? Can someone knowledgeable please point me to an actual Wiki page with all the data sources, versions, and normalizations/alignments? Next question, what is the general development timeline for data sources and applications, is there somewhere a clean overview? Thanks. Best regards, Joerg Kurt Wegner http://www.joergkurtwegner.eu ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-08-03 21:04 Message: See reply at http://lists.w3.org/Archives/Public/public-semweb-lifesci/2011Aug/0002.html Seems best to have this discussion on a mailing list rather than here, as I am the only person who frequents this tracker in my work keeping the server software maintained. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814190&aid=3385405&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-08-03 08:34:06
|
Support Requests item #3385405, was opened at 2011-08-03 10:34 Message generated for change (Tracker Item Submitted) made by wegner You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814190&aid=3385405&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Priority: 5 Private: No Submitted By: Joerg Kurt Wegner (wegner) Assigned to: Nobody/Anonymous (nobody) Summary: Maintenance and development timelines Initial Comment: I have a maintenance and development timeline question. Can you please list all integrated data sources with their current date and version, especially when data sources were updated the last time. I found a comment on the W3C mailing list, still this is not sufficient for getting a "maintenance feeling". http://lists.w3.org/Archives/Public/public-semweb-lifesci/2011Jul/0000.html What is the general strategy with respect to the Chembl data set, I appreciate the various versions out there and @Egon, can you ensure regular update cycles and will Bio2RDF ensure that, too? Would it not be better that the group of John Overington is publishing regular updates as part of their regular releases? Can someone knowledgeable please point me to an actual Wiki page with all the data sources, versions, and normalizations/alignments? Next question, what is the general development timeline for data sources and applications, is there somewhere a clean overview? Thanks. Best regards, Joerg Kurt Wegner http://www.joergkurtwegner.eu ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814190&aid=3385405&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-28 05:48:48
|
Feature Requests item #3339614, was opened at 2011-06-28 15:48 Message generated for change (Tracker Item Submitted) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=3339614&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Configuration files Group: v1.0.1 Status: Open Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Configuration based Robots.txt Initial Comment: The webapp configuration files need to be extended to include support for robots.txt query and global level instructions: Example: global: /queryplan/, /admin/ query: /links/, /search/ ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=3339614&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-20 22:37:48
|
Feature Requests item #3323478, was opened at 2011-06-21 08:37 Message generated for change (Tracker Item Submitted) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=3323478&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Model changes Group: v1.0 Status: Open Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Support R2R templates Initial Comment: Should be able to have some minimal support for R2R templates that are generally compatible with SPARQL, although in some cases there are variables that include non-standard syntax such as ?'variable'^^xsd:string and ?<uri> etc, where it shouldn't be necessary using SPARQL 1.1 anyway ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=3323478&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-20 05:53:34
|
Feature Requests item #2811831, was opened at 2009-06-25 08:42 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2811831&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application >Group: v1.0 >Status: Closed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) >Assigned to: Peter Ansell (p_ansell) Summary: Improve the efficiency of SparqlQueryCreator.doReplacement Initial Comment: * Improve the efficiency of SparqlQueryCreator.doReplacementsOnString Not all of the strings need to be generated... need some way of determining which ones are needed for a particular run and then only create them, as there can easily be an explosion of the number of strings being generated that could be avoided ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-20 15:53 Message: using the known tag pattern ${...}, we are otimising the process ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2811831&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-20 05:52:27
|
Feature Requests item #2811832, was opened at 2009-06-25 08:43 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2811832&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Model changes >Group: v1.0 >Status: Closed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Nobody/Anonymous (nobody) Summary: Make /image/ for dbpedia use a sparql query before redirect Initial Comment: * Enable /image/ for dbpedia:Basilic_vein to redirect to the object of the foaf:depiction and/or foaf:img triple if it is found ** This is tricky as it requires a query before redirection. Likely needs another jsp page other than atlas2rdf.jsp which is written up to service a single request without negotiating based on the response ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-20 15:52 Message: /image/ no longer redirects, so this is not an issue. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2811832&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-20 05:51:30
|
Feature Requests item #2811834, was opened at 2009-06-25 08:45 Message generated for change (Settings changed) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2811834&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Model changes Group: v1.0 Status: Closed Priority: 7 Private: No Submitted By: Peter Ansell (p_ansell) >Assigned to: Peter Ansell (p_ansell) Summary: Add remove triples pattern query type Initial Comment: * Add ability to define a pattern to match against the final output (and possibly intermediate outputs) to remove triples matching the pattern. This will likely require another object type in the system as the normalisation rules are not intended to be anything but regular expressions, where the removal will be occuring at the RDF level using SPARQL/Update ---------------------------------------------------------------------- Comment By: Peter Ansell (p_ansell) Date: 2011-06-20 15:51 Message: Implemented using SparqlNormalisationRule in verson 1.0. v1.0 includes Sesame 2.4.0, which is the first version of sesame to include support for SPARQL 1.1 Query that makes it possible to perform arbitrary modifications to the input graph ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2811834&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-20 05:51:18
|
Feature Requests item #2811834, was opened at 2009-06-25 08:45 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2811834&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Model changes >Group: v1.0 >Status: Closed Priority: 7 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Nobody/Anonymous (nobody) Summary: Add remove triples pattern query type Initial Comment: * Add ability to define a pattern to match against the final output (and possibly intermediate outputs) to remove triples matching the pattern. This will likely require another object type in the system as the normalisation rules are not intended to be anything but regular expressions, where the removal will be occuring at the RDF level using SPARQL/Update ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-20 15:51 Message: Implemented using SparqlNormalisationRule in verson 1.0. v1.0 includes Sesame 2.4.0, which is the first version of sesame to include support for SPARQL 1.1 Query that makes it possible to perform arbitrary modifications to the input graph ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2811834&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-20 05:49:23
|
Feature Requests item #2821675, was opened at 2009-07-15 16:41 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2821675&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. >Category: Web application >Group: v1.0 >Status: Closed Priority: 8 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Allow for namespace specific Velocity .vm templates Initial Comment: * Should allow for the ability to create namespace specific templates so that namespaces are rendered better if someone has designed a template file for them As part of this will need to allow access to aggregated sets of predicates so that they can all be rendered together as required ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-20 15:49 Message: Users can script their personal .vm templates to perform this function, but it is not appropriate at the model level given the context sensitive nature of namespaces. 1.0 includes support for .vm changes at the configuration level, so there are no software changes needed to support this in future as far as I can tell. ---------------------------------------------------------------------- Comment By: Peter Ansell (p_ansell) Date: 2009-07-27 09:15 Message: Object might be more applicable if it related a single template to a single output MIME format to zero or more namespaces to one or more query string matches. It is troublesome to relate things to query types if they are designed to be relevant to the query string, as there is an immediate one to many relationship between query strings and query types in most situations, and don't really need ordering as in some other cases to make this idea consistent ---------------------------------------------------------------------- Comment By: Peter Ansell (p_ansell) Date: 2009-07-27 09:10 Message: Add a new object relating namespaces and query types to particular velocity templates Namespace/Querytype *List of velocity templates that can all be used if namespace is found in one of the namespace input indexes on the query type ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2821675&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-20 05:47:00
|
Feature Requests item #2827500, was opened at 2009-07-27 08:35 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2827500&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Model changes Group: v0.8.0 >Status: Closed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Only include custom static additions for some output formats Initial Comment: Have option to only include the custom query static additions based on the selected output format... Or possibly only have them show up as interface additions, and not triple additions ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-20 15:46 Message: Not implemented in the end. Best to have the same data across all formats, including RDFa embedded in HTML ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2827500&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-20 05:45:44
|
Feature Requests item #2840740, was opened at 2009-08-20 11:40 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2840740&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. >Category: Web application >Group: v1.0 >Status: Closed Priority: 9 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: JSON output format Initial Comment: JSON is significantly easier to work with for simple HTML and Javascript mashups, so it should be available as an output format in a similar way to /rdfxml/ and /n3/ are now. ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-20 15:45 Message: JSON support implemented using /json/ or using content negotiation using application/json ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2840740&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-20 02:13:58
|
Feature Requests item #2890502, was opened at 2009-11-02 11:22 Message generated for change (Settings changed) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2890502&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Model changes >Group: None Status: Open >Priority: 3 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Allow definition of alternates for blacklisted endpoints Initial Comment: When an endpoint is down, an alternate may be preferred, but the alternate may not need to be utilised when the main endpoint is functioning. One method may be to have a new element that defines provider sets, with a preferred and alternates. A model change would be required to support this. ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-20 12:13 Message: ProviderGroups are designed, but not implemented yet. For now, redundancy is provided through multiple endpoints. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2890502&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-20 02:12:26
|
Feature Requests item #2979760, was opened at 2010-03-31 15:02 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2979760&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. >Category: Web application >Group: v1.0 >Status: Closed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) >Assigned to: Peter Ansell (p_ansell) Summary: Implement XML fetch and XSLT transform to RDF provider Initial Comment: A common method of fetching raw data in other systems is to use XML to generate XSLT. This process can be extended to use RDF/XML as the output format. ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-20 12:12 Message: See XsltNormalisationRule's in 1.0 ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2979760&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-20 02:11:42
|
Feature Requests item #2982455, was opened at 2010-04-06 13:10 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2982455&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application >Group: v1.0 >Status: Closed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Include RDF based normalisation rules Initial Comment: Need to include the ability to define normalisation rules in RDF. These would only be renormalisation rules, as they are not applicable to raw queries. They should be used after textual normalisation of the results, particularly in order to perform schema migration where it is necessary, something that is required at the RDF model level, or higher. ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-20 12:11 Message: see new stages for normalisation rules, and SPARQL normalisation rules as prototype RDF normalisation rules for these stages ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2982455&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-20 01:29:31
|
Feature Requests item #2836630, was opened at 2009-08-13 11:47 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2836630&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application >Group: v1.0 >Status: Closed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Generate robots.txt on the fly Initial Comment: In order to keep robots.txt consistent and based on the configuration it should be automatically generated from the query type definitions internally kept, along with some package specific aliases. ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-20 11:29 Message: RobotsTxtServlet ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2836630&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-15 23:20:09
|
Bugs item #3317068, was opened at 2011-06-16 09:20 Message generated for change (Tracker Item Submitted) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=3317068&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Configuration files Group: v1.0 Status: Open Resolution: None Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Use Sparql 1.1 Query functions to normalise data Initial Comment: It has not been possible to normalise some data before the SPARQL 1.1 Query draft was proposed and implemented by Sesame 2.4.0. Now that 2.4.0 has been released, need to add rules for parts such as the prosite construct on the Neurocommons databases where they put in URIs as literals and made it difficult to use their data. In addition, URIs can be constructed dynamically from results data using normalisation rules now, making it possible to do further RDFisation using SPARQL, given some input RDF data and a Sparql 1.1 Construct query. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=3317068&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-15 06:39:41
|
Bugs item #3316516, was opened at 2011-06-15 11:11 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=3316516&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application Group: v1.0 >Status: Closed >Resolution: Fixed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Make home page configurable Initial Comment: Make a servlet for the home page, and make it configurable with Velocity templates and variables such as how many providers and query types are currently utilised by the server. ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-15 16:39 Message: implemented using IndexPageServlet.java in bio2rdf-webapp ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=3316516&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-15 01:11:33
|
Bugs item #3316516, was opened at 2011-06-15 11:11 Message generated for change (Tracker Item Submitted) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=3316516&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application Group: v1.0 Status: Open Resolution: None Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Make home page configurable Initial Comment: Make a servlet for the home page, and make it configurable with Velocity templates and variables such as how many providers and query types are currently utilised by the server. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=3316516&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-15 01:05:42
|
Bugs item #2819428, was opened at 2009-07-10 17:34 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2819428&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application Group: v0.7.1 >Status: Closed >Resolution: Fixed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Make profile include exclude decisions visible to users Initial Comment: The result of the profile decision process is currently not exposed to the user interface in any way, as it is returned as a true or false value. It would be nice to allow this information to be visible at a high level, such as the query bundle level, to indicate in the debugging information which profile was responsible for allowing a particular provider and query combination to be used. ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-15 11:05 Message: overall profile include exclude results are given using /admin/profiles ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2819428&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-15 01:04:42
|
Bugs item #2827221, was opened at 2009-07-26 11:36 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2827221&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application Group: v0.7.1 >Status: Closed >Resolution: Wont Fix Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Avoid making links for invalid URL's Initial Comment: Some Non-RDF URL's are made into links in the HTML interface for convenience, but not all are valid. Need a way of determining from within the Velocity template whether a String is a valid URI. ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-15 11:04 Message: any string starting with http:// or https:// is made into an anchor. If the URL is invalid then the user will have to recognise that. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2827221&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-15 01:02:47
|
Bugs item #2819409, was opened at 2009-07-10 16:17 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2819409&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application Group: v0.7.1 >Status: Closed >Resolution: Later Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Only utilise rules which pass all tests Initial Comment: When the configuration setup is complete and all rules and rule tests have been imported, there should be the option to run a sanity check on the rules to make sure that all of the rule tests that link to a given rule pass, and if there are any failures, or optionally there were no tests, then the rule should not be used. ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-15 11:02 Message: users can run the automated rule testing and determine if they are satisfied with the results ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2819409&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-15 01:01:18
|
Bugs item #2819415, was opened at 2009-07-10 16:35 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2819415&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Configuration files Group: v0.9.0 >Status: Closed >Resolution: Wont Fix >Priority: 4 Private: Yes Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Simple method of authenticating configuration Initial Comment: Need a simple method of authenticating configurations in order to prevent hacking attempts. Need a method of normalising the configuration for a particular item before signing it and hashing it to double check maybe... Should be able to generate a NTriples string based on the configuration and then sort the lines (subject first, then predicate, then object) before making up a normalised representation and signing it. Any issues with sorting that come from the oddities of typed RDF literals should be fixed by a method which standardises the literals for a particular predicate to be all the same, so a single typed literal sorting algorithm will apply to all objects for a particular predicate. Use the import process as a filter to ensure that the final representation is validated using the Java Integer.parseInt etc., methods and apply the signature to whatever object is created by the import process. ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-15 11:01 Message: configuration files can be published using HTTPS from secure locations if necessary. ---------------------------------------------------------------------- Comment By: Peter Ansell (p_ansell) Date: 2010-05-25 14:14 Message: Useful code for this bug: http://java.sun.com/docs/books/tutorial/security/apisign/index.html ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2819415&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-14 22:03:09
|
Bugs item #2819411, was opened at 2009-07-10 16:24 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2819411&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application >Group: v1.0 >Status: Closed >Resolution: Wont Fix Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Add option to ignore output rules to keep endpoint URIs Initial Comment: There should be a configuration option available which ignores all output rules, resulting in RDF documents which will generally contain only the URI's as given on each endpoint, subject to users explicitly creating queries which change the URI's straight back to the default URI's outside of the Normalisation Rule scheme. ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-15 08:03 Message: regex normalisation rules can be created without an output rule ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2819411&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-14 22:02:03
|
Bugs item #2819426, was opened at 2009-07-10 17:29 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2819426&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Configuration files >Group: v1.0 >Status: Closed >Resolution: Fixed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) >Assigned to: Peter Ansell (p_ansell) Summary: Make up primaryreverseconstruct and secondaryreverseconstruc Initial Comment: There needs to be a way to allow the use of reverseconstruct for some namespaces but not others, and it would be most appropriately done by making up two types of reverseconstruct, one for where configuration editors know a namespace is unrdfised and they want to include the source to get some information back, and another where configuration editors know that a namespace is rdfised, and there is a usecase for some users not wanting to know about the extra information in typical /namespace:identifier being able to easily exclude "secondaryreverseconstruct" from their list of allowed query types in order to stop the queries occuring and boost the performance of their endpoint with relationship to resolution of /namespace:identifier ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-15 08:02 Message: there is not a secondaryreverseconstruct that has been assigned in most cases where there is a primary database available, but extra information is available from secondary databases ---------------------------------------------------------------------- Comment By: Peter Ansell (p_ansell) Date: 2009-07-31 09:04 Message: Initial subversion configuration file change to make both primary and secondary reverse construct queries available. Now need someone (Marc?) to check out the subversion configuration files and manually choose which namespaces on which providers should actually be secondary reverse construct and create new providers as necessary with secondary reverse construct so that they won't be called by the default fast mirror configuration after it is done and check in the resulting changes to the RDF configuration files into subversion ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2819426&group_id=142631 |
|
From: SourceForge.net <no...@so...> - 2011-06-14 21:59:00
|
Bugs item #2824545, was opened at 2009-07-21 08:32 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2824545&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Configuration files >Group: v1.0 >Status: Closed >Resolution: Postponed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Add GROUP BY to any queries that include offset Initial Comment: The use of OFFSET won't always be correct unless there is a GROUP BY clause... This will make queries slower, but if users are expecting offset to work correctly then the performance loss has to be taken. ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2011-06-15 07:58 Message: queries do not complete because databases are very inefficient at computing results for almost all queries when group by is added ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2824545&group_id=142631 |
