Error.Error ... in sendsketch output
BBMap short read aligner, and other bioinformatic tools.
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brian-jgi
I used sendsketch protein format=3
with a tranlated sketch.
I got some weird result back.
I don't know it it's due to the fact that I use bbmap 38.76
#Query Ref ANI QSize RefSize QBases RBases QTaxID RTaxID KID WKID SSU
Error.Error.Error.Error.Error.MAG17403.fasta Muribaculaceae bacterium Isolate-113 (HZI) 97.979 907916 929874 938328 978778 -1 2486474 79.176 81.148 72.658
MAG17403.fasta Muribaculaceae bacterium Isolate-114 (HZI) 97.977 907916 955327 938328 1000967 -1 2486475 77.208 81.101 72.677
MAG
MAG26934.fasta Helicobacter mesocricetorum 90.310 518868 512617 542027 546331 -1 87012 33.938 34.789 .
Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.Error.
log:
Adding /srv/beegfs/scratch/users/k/kiesers/Atlas/databases/conda_envs/3b6648f3/opt/bbmap-38.75-0/resources/blacklist_prokprot_merged.sketch to blacklist.
0.419 seconds.
Loaded 31696 sketches in 24.492 seconds.
Total Time: 3301.897 seconds.
So no, updating the version doesn't change the problem
OK, rebuilding the sketch with the newest version solved theproblem.
Ticked can be closed.