limiting threads for clumpify
BBMap short read aligner, and other bioinformatic tools.
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brian-jgi
Hi Brian,
As I share my server with others I would like to use only a part of the pool.
I tried threads=24 but apparently this command does not support limiting threads (version 38.32).
Any idea?
Thanks for the great toolbox
Unknown parameter theads=24
Exception in thread "main" java.lang.AssertionError: Unknown parameter theads=24
at clump.KmerSort1.<init>(KmerSort1.java:173)
at clump.KmerSort1.main(KmerSort1.java:41)
at clump.Clumpify.process(Clumpify.java:243)
at clump.Clumpify.main(Clumpify.java:37)
Hi Stephane,
I didn't notice at first, but looks like you misspelled "threads" :) Normally I use "t=24" so I don't risk misspelling.
I am confused!
Sorry very much, my dyslexia hit again :-)