RE: [base] make error while installing BASE 1.2.12

[CHUAH S. H. <chu...@bt...>]

Hi,

I've similar problem as well. The installation went fine on Linux PC.
However, when I tried to install BASE on our Sun Server running Solaris
8, make complaint about the undeclared variables in the file Vector.h
while compiling the Hierarchical Clustering plugin. In the end, I've to
disable the plugin compilation (through option of configure) to get BASE
installed.

Anybody has any idea what's wrong with it?

Thanks & Regards,
Song Hui Chuah
Microarray Laboratory
BTI Singapore


-----Original Message-----
From: bas...@li...
[mailto:bas...@li...] On Behalf Of Rupali
Patwardhan
Sent: Friday, July 16, 2004 7:22 AM
To: bas...@li...
Subject: [base] make error while installing BASE 1.2.12

Hi,

I am trying to install BASE 1.2.12
I have successfully completed the --configure  command.

But I'm getting an error with the make command.=20

Here are the first few lines of the error message -

In file included from BaseClustering.h:7,
                 from main.cc:17:
Vector.h: In member function `double
VectorL1<pointT>::VecDistance(pointT*,
pointT*)':
Vector.h:74: error: `d' undeclared (first use this function)=20

There seems to be some problem with the variable 'd' in vector.h, but I
can't
figure out exactly what is wrong in that file. However I could see that
'd' has
been used twice in that file - Once as an 'int' and once more as d(dim).


I am pasting below the entire message i get on giving the make command.

Thanks,
Rupali

> /usr/xpg4/bin/make
/usr/xpg4/bin/make  all-recursive
Making all in include
Making all in classes
`all' is updated.
Making all in common
`all' is updated.
Making all in drivers
`all' is updated.
Making all in local_distr
`all' is updated.
Making all in web
`all' is updated.
Making all in java
`all' is updated.
`all-am' is updated.
`all' is updated.
Making all in src
Making all in lib
`all' is updated.
Making all in assayImporter
`all' is updated.
Making all in sectionCounter
`all' is updated.
Making all in jobRunner
`all' is updated.
Making all in plotapplet
`all' is updated.
Making all in mageml
`all' is updated.
`all-am' is updated.
`all' is updated.
Making all in plugins
Making all in src
Making all in clustering
Making all in Cgraph
Making all in include
`all' is updated.
Making all in source
`all' is updated.
`all-am' is updated.
`all' is updated.
source=3D'main.cc' object=3D'main.o' libtool=3Dno \
depfile=3D'.deps/main.Po' tmpdepfile=3D'.deps/main.TPo' \
depmode=3Dnone /bin/ksh ../../../autotools/depcomp \
g++ -DHAVE_CONFIG_H -I. -I. -I../../.. -I../../../src/include
-I./Cgraph/include
    -Wall   -O3 -c -o main.o main.cc
In file included from BaseClustering.h:7,
                 from main.cc:17:
Vector.h: In member function `double
VectorL1<pointT>::VecDistance(pointT*,
pointT*)':
Vector.h:74: error: `d' undeclared (first use this function)
Vector.h:74: error: (Each undeclared identifier is reported only once
for each
function it appears in.)
Vector.h: In member function `double
VectorL2<pointT>::VecDistance(pointT*,
pointT*)':
Vector.h:91: error: `d' undeclared (first use this function)
Vector.h: In member function `double
VectorLinf<pointT>::VecDistance(pointT*,
pointT*)':
Vector.h:112: error: `d' undeclared (first use this function)
Vector.h: In member function `double
VectorDot<pointT>::VecDistance(pointT*,
pointT*)':
Vector.h:131: error: `d' undeclared (first use this function)
Vector.h: In member function `void
VectorCorr<pointT>::NormalizePoint(pointT*)':
Vector.h:145: error: `d' undeclared (first use this function)
Vector.h: In constructor `VectorCorr<pointT>::VectorCorr(long unsigned
int, int,
pointT*)':
Vector.h:172: error: `d' undeclared (first use this function)
Vector.h: In member function `double
VectorCorr<pointT>::VecDistance(pointT*,
pointT*)':
Vector.h:182: error: `d' undeclared (first use this function)
Vector.h: In member function `double
VectorCorrAbs<pointT>::VecDistance(pointT*,
pointT*)':
Vector.h:216: error: `d' undeclared (first use this function)
Vector.h: In member function `void
VectorCorrAbs<pointT>::interact(point, point,
int)':
Vector.h:233: error: `points' undeclared (first use this function)
Vector.h:233: error: `d' undeclared (first use this function)
Vector.h:242: error: `weights' undeclared (first use this function)
Vector.h:250: error: there are no arguments to `NormalizePoint' that
depend on a
template parameter, so a declaration of `NormalizePoint' must be
available
Vector.h:250: error: (if you use `-fpermissive', G++ will accept your
code, but
allowing the use of an undeclared name is deprecated)
Vector.h: In member function `double
VectorCorrAbs<pointT>::VecDistance(pointT*,
pointT*) [with pointT =3D double]':
main.cc:253:   instantiated from here
Vector.h:227: warning: passing `double' for converting 1 of `int
abs(int)'
*** Error code 1
make: Fatal error: Command failed for target `main.o'
Current working directory /var/base/base-1.2.12/plugins/src/clustering
*** Error code 1
make: Fatal error: Command failed for target `all-recursive'
Current working directory /var/base/base-1.2.12/plugins/src/clustering
*** Error code 1
make: Fatal error: Command failed for target `all-recursive'
Current working directory /var/base/base-1.2.12/plugins/src
*** Error code 1
make: Fatal error: Command failed for target `all-recursive'
Current working directory /var/base/base-1.2.12/plugins
*** Error code 1
make: Fatal error: Command failed for target `all-recursive'
Current working directory /var/base/base-1.2.12
*** Error code 1
make: Fatal error: Command failed for target `all'





--=20
Rupali Patwardhan

Graduate Student
School of Informatics
Indiana University.


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