[base] Adding reporters.

[marcus <ma...@bi...>]

Hello.

This is a subject that has no ends a guess.
At our lab it has worked just fine to add reporters by using array
design and adding a reporter map. I the later case we thought that we
should use unique reporters for a entire chip, (instead of empty, we use
empty_1 and so forth). When I try to add this new reporter map for a new
array design I can't seem to add the reporter.
I have for example a reporter called NMA00473 in the reporter database.
The reporter that I'm trying to add is called NMA00473.1, but when I try
to upload the reporter map I get the message: Unable to add reporter
'NMA00473.1'
Operation aborted

And this specific reporter is the first reporter in the file. I don't
think that the reporter map format is wrong since it has worked with
previous files, (which has the same formats).
Is there an upper limit in size of the numbers of reporters, or what
might be the reason for not being able to add any more reporters?

Would be grateful for some help.

/Marcus  

-----Original Message-----
From: bas...@li...
[mailto:bas...@li...] On Behalf Of
zp...@he...
Sent: Tuesday, April 20, 2004 3:29 PM
To: bas...@li...
Subject: Re: [base] Installing BASE in Fedora

"sudo" is only needed for installation, and gcc should take care 
of what's in /usr/include and /usr/lib.

Write a short shell script, say called base_config:

CPPFLAGS="-I/usr/local/include -I/other directories"
export CPPFLAGS
LDFLAGS="-L/usr/local/lib -L/other directories"
export LDFLAGS
./configure --disable-plugins


Then have a clean start:

make distclean
sh base_config
...

Good luck.


Dr Zong-Pei Han
UNIX Systems Administrator
Computational Biology Research Group
University of Oxford
--
http://www.compbio.ox.ac.uk/


On Tue, 20 Apr 2004, Fredrik Johansson wrote:
Date: Tue, 20 Apr 2004 14:23:56 +0200
From: Fredrik Johansson <fre...@st...>
Reply-To: bas...@li...
To: bas...@li...
Subject: Re: [base] Installing BASE in Fedora

Well, it seems my libraries are a little here and there, so this is what
I tried:
CPPFLAGS="-I/usr/include -I/usr/local/include -I/usr/lib/libgd/
-I/home/frejoh/Downloaded/gsl-1.4/ -I/usr/local/include/libtiff/"
export CPPFLAGS
sudo ./configure --disable-plugins

But it didn't do me any good, still the same libraries missing. Any
ideas?

Fredrik



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