AtomProbeLab

A collection of scripts and functions for the analysis of atom probe tomography data. Currently, this includes: standard file operations, plotting mass spectra, mass spectra analysis and mass peak overlap solving.
For more information see the Wiki: https://sourceforge.net/p/atomprobelab/wiki/Home/
Quick overview video:
https://youtu.be/8rJHce7M5UU
More in-depth video using the APT school demos live script:
https://www.youtube.com/watch?v=cyrLHCzZwuw

For details of the maximum likelihood method used to solve peak overlaps see the following papers: https://doi.org/10.1017/S1431927616012782 and https://doi.org/10.1017/S1431927618016276 for the quantification of the uncertainty.

If you are looking for Dan Haley's "weights" program, go here https://sourceforge.net/projects/apttools/files/extras/

Features

Atom probe data analysis
Mass spectrum quantification
Mass spectrum plotting tools

Project Samples

Single-ion peak deconvolution using AtomProbeLab

Overlap graph created using AtomProbeLab. Nodes are ions, links show which ions have peak overlaps. The number on each line shows which positions are overlapped and the line thickness shows how difficult the problem is to solve (thicker = higher uncertainty)

Project Activity

See All Activity >

Follow AtomProbeLab

AtomProbeLab Web Site

Other Useful Business Software

Ship Agents Faster

Transform your applications and workflows into powerful agentic systems at global scale.

Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.

Start Free

Rate This Project

User Reviews

Be the first to post a review of AtomProbeLab!

Additional Project Details

Programming Language

MATLAB

Related Categories

MATLAB Scientific Engineering, MATLAB Data Analytics Tool

Registered

2016-06-30

Similar Business Software

Google Cloud BigQuery

BigQuery is a serverless, multicloud data warehouse that simplifies the process of working with all types of data so you can focus on getting valuable business insights quickly. At the core of Google’s data cloud, BigQuery allows you to simplify data integration, cost effectively and securely...

See Software
Lockbox LIMS

A sample tracking, test result capture, and inventory management cloud LIMS for life science research, biotech/NGS, and industrial QC labs. Includes regulatory support for CLIA, HIPAA, Part 11, and ISO 17025. Nothing is more critical to a lab’s success than the quality, security, and...

See Software
QBench

Labs deserve more than just another LIMS. They need a complete operating system for modern laboratory operations. QBench delivers exactly that – transforming how labs handle everything from order placement to sample processing to automated reporting. Think of QBench as your lab's operating...

See Software
RegDesk

RegDesk is a Regulatory Information Management System (RIMS) that helps medical device companies manage global regulatory submissions, product registrations, and compliance in one centralized platform. It streamlines regulatory workflows, organizes regulatory data, and provides global regulatory...

See Software
SAP S/4HANA Cloud Public Edition

SAP Cloud ERP is the premier ERP solution for growth-focused organizations. Seamlessly integrating AI, and predictive analytics, it empowers businesses to digitally transform and streamline processes end to end. Leveraging built-in industry best practices, SAP Cloud ERP accelerates...

See Software
Qualio

Qualio is the leading quality and compliance platform built exclusively for emerging life sciences companies. MedTech, pharma, biotech, and diagnostics teams use Qualio to standardize quality processes, connect them to regulatory obligations, and gain real-time visibility into compliance...

See Software