ASGENSENG Wiki

A software to detect allele specific CNV from both WGS and WES data.

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Weibo Wang (admin)
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Discussion

GVarma - 2015-04-30

hi,

I would like to use the GENSENG or AS-GENSENG for my WGS data, but I am not sure how to create the input data file (ex: http://www.cs.unc.edu/~wangwb09/GENSENG/reviseddata4hmm_300bpSlides_chr1.txt ).

I have a .bam file, may I know how can I create "chr str stp winsize mbase mprop gprop wincount ttm ttg ttr h.gc log.map state" all these values?.

Since, the input file for the GENSENG or AS-GENSENG only in this format?, it would be really helpful if this information is included in the README file.

Thanks,
GVarma

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