Re: [Apbs-users] ObjectMapLoadDXFile-Error: Unable to open file!
Biomolecular electrostatics software
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From: <jw...@sa...> - 2006-07-15 02:12:01
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Many thanks folks. I will upgrade Python and see what happens. Jinhua > Jinhua, > > My guess is that PyMOL is built against an old version of Python that > may not support the APBS plugin... > > Cheers, > Warren > > -----Original Message----- > From: Nathan Baker [mailto:sob...@gm...] On Behalf Of Nathan > Baker > Sent: Friday, July 14, 2006 4:47 PM > To: Todd Dolinsky > Cc: Jinhua Wu; Adaptive Poisson-Boltzmann Solver user discussion list; > Warren DeLano > Subject: Re: [Apbs-users] ObjectMapLoadDXFile-Error: Unable to open > file! > > Yep, that error definitely doesn't look like APBS; I'll see if Warren > has any ideas. > > Thanks! > > On Jul 14, 2006, at 6:00 PM, Todd Dolinsky wrote: > > > Hi Jinhua - > > > > Although the ObjectMapLoadDXFile error can indicate an issue with > > getting APBS started, I'm pretty sure this is a PyMOL-centric issue > > due to the fact that it's a Python error: > > > >> from __future__ import division > >> ImportError: No module named __future__ > > > > You might want to try the PyMOL mailing list, or checking to see if > > your version of Python is up to date (including the __future__ > > module). > > > > Todd > > > > > > On 7/14/06, Jinhua Wu <jw...@sa...> wrote: > >> Dear APBS users, > >> > >> Recently I installed pymol and apbs plug-in on my Mac (10.4.6). > >> I tried run apbs in pymol. It failed although the calculation > >> seemed to be > >> fine. I am using the latest apbs_tools.py. Also I looked through the > >> previous posts and tried a few things but no success. Here is the > >> error > >> message - please help me out, thanks! > >> > >> cs [5, 5, 6] > >> finedim [79.357999801635742, 75.404000282287598, 84.568999290466309] > >> nlev 4 > >> mult_fac 32 > >> finegridpoints [161, 161, 193] > >> Maximum number of grid points exceeded. Old grid dimensions were > >> [161, 161, > >> 193 > >> ] > >> Fine grid points rounded down from [101, 101, 119] > >> New grid dimensions are [97, 97, 97] > >> APBS Tools: coarse grid: (100.909,94.187,109.767) > >> APBS Tools: fine grid: (79.358,75.404,84.569) > >> APBS Tools: center: (8.884,-13.040,18.147) > >> APBS Tools: fine grid points (97,97,97) > >> 'import site' failed; use -v for traceback > >> Traceback (most recent call last): > >> File > >> "/Users/jwu/Desktop/Pymol_files/pymol/modules/pmg_tk/startup/ > >> apbs_tools.py", > >> line 44, in ? > >> from __future__ import division > >> ImportError: No module named __future__ > >> ObjectMapLoadDXFile-Error: Unable to open file! > >> > >> > >> Jinhua > >> > >> > >> Jinhua Wu Ph.D. > >> Skirball Institute > >> NYU Medical Center > >> 212-263-2306 > >> > >> > >> > >> > >> > >> > >> --------------------------------------------------------------------- > > >> ---- > >> Using Tomcat but need to do more? Need to support web services, > >> security? > >> Get stuff done quickly with pre-integrated technology to make your > >> job easier > >> Download IBM WebSphere Application Server v.1.0.1 based on Apache > >> Geronimo > >> http://sel.as-us.falkag.net/sel? > >> cmd=lnk&kid=120709&bid=263057&dat=121642 > >> _______________________________________________ > >> apbs-users mailing list > >> apb...@li... > >> https://lists.sourceforge.net/lists/listinfo/apbs-users > >> > > > > > > ---------------------------------------------------------------------- > > > --- > > Using Tomcat but need to do more? Need to support web services, > > security? > > Get stuff done quickly with pre-integrated technology to make your > > job easier > > Download IBM WebSphere Application Server v.1.0.1 based on Apache > > Geronimo > > http://sel.as-us.falkag.net/sel? > > cmd=lnk&kid=120709&bid=263057&dat=121642 > > _______________________________________________ > > apbs-users mailing list > > apb...@li... > > https://lists.sourceforge.net/lists/listinfo/apbs-users > > > > -- > Assistant Professor, Dept. of Biochemistry and Molecular Biophysics > Center for Computational Biology, Washington University in St. Louis > Web: http://cholla.wustl.edu/ > > > > > > > ---------------------------------------------------------------- This message was sent using IMP, the Internet Messaging Program. |