Re: [Apbs-users] Compiling apbs-0.4.0 on Intel OS X

[William S. <wg...@ch...>]

Dear Dave:

Sorry, I was on my way to bed when I sent that.

I've made a fink package for apbs and you can either use that to =20
compile apbs, look at how I did it to compile apbs on your own, or =20
you can install my binary version.

http://xanana.ucsc.edu/~wgscott/xtal/wiki/index.php/=20
Quick_Start_:_Intel-based_OS_X

which is the same as http://tinyurl.com/z5nxe

(I pasted the wrong thing in my haste, sorry!)

Here is the fink compiling script I made:

http://xanana.ucsc.edu/fink_intel/fink/10.4/unstable/main/finkinfo/=20
sci/apbs.info

I did a global search/replace of g77 with g95.

I haven't gotten g77 to work on intel, but g95 and to some extent =20
gfortran does.  I think apbs also compiles with fort77 (f2c), and =20
likely with the intel compiler, which you can get for a free trial =20
period (probably the best compiler option, though unlikely to remain =20
free).

HTH,

Bill




On Apr 27, 2006, at 7:22 AM, Dave W. wrote:

> Hi William,
>
> Thank you, but I'm afraid your tinyurl link didn't take me to the =20
> intended
> destination - I just got the tinyurl.com page.  Perhaps you could =20
> send me a
> direct link?
>
> Thanks,
>
> -Dave
>
>
>
> On 4/27/06, William Scott <wg...@ch...> wrote:
>>
>>
>> Yes.
>>
>> Look here and follow the links:  http://tinyurl.com/
>>
>>
>>
>> On Wed, 26 Apr 2006, Dave W. wrote:
>>
>>> Hi everyone,
>>>
>>> I'm running into problems compiling APBS to run on my Intel OS X =20
>>> (does
>>> anyone have binaries?).  Here are the last few lines before the =20
>>> error.
>>> Can anyone suggest a fix?
>>>
>>> Dave
>>>
>>> Making all in bin
>>> cd .. && \
>>>  : --gnu  bin/Makefile
>>> /bin/sh ../libtool --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I.
>>> -I../src/aaa_inc -I. -I/Users/dave/include        -g -O2 -c -o
>>> routines.lo `test -f 'routines.c' || echo './'`routines.c
>>> gcc -DHAVE_CONFIG_H -I. -I. -I../src/aaa_inc -I. -I/Users/dave/=20
>>> include
>>> -g -O2 -c routines.c -o routines.o
>>> echo timestamp > routines.lo
>>> /bin/sh ../libtool --mode=3Dlink g77  -g -O2 -g -O2  -o
>>> libapbsmainroutines.la -rpath /Users/dave/lib/i386-apple-darwin8.6.1
>>> -version-info 1:0:0 routines.lo
>>> mkdir .libs
>>> rm -fr .libs/libapbsmainroutines.la .libs/libapbsmainroutines.*
>>> .libs/libapbsmainroutines.*
>>> ar cru .libs/libapbsmainroutines.a  routines.o
>>> ranlib .libs/libapbsmainroutines.a
>>> creating libapbsmainroutines.la
>>> (cd .libs && rm -f libapbsmainroutines.la && ln -s
>>> ../libapbsmainroutines.la libapbsmainroutines.la)
>>> gcc -DHAVE_CONFIG_H -I. -I. -I../src/aaa_inc -I. -I/Users/dave/=20
>>> include
>>>       -g -O2 -c `test -f 'main.c' || echo './'`main.c
>>> /bin/sh ../libtool --mode=3Dlink g77  -g -O2 -g -O2  -o apbs  main.o
>>> routines.o ../src/aaa_lib/libapbs.la
>>> -L/Users/dave/compile/apbs/apbs-0.4.0/lib
>>> -L/Users/dave/lib/i386-apple-darwin8.6.1  -lmaloc
>>> -L/Users/dave/lib/i386-apple-darwin8.6.1  -lblas
>>> -L/Users/dave/lib/i386-apple-darwin8.6.1  -lvf2c   -lm -lreadline
>>> -lncurses
>>> g77 -g -O2 -g -O2 -o apbs main.o routines.o
>>> ../src/aaa_lib/.libs/libapbs.a
>>> -L/Users/dave/lib/i386-apple-darwin8.6.1
>>> -L/Users/dave/compile/apbs/apbs-0.4.0/lib
>>> /Users/dave/lib/i386-apple-darwin8.6.1/libmaloc.a
>>> /Users/dave/lib/i386-apple-darwin8.6.1/libblas.a
>>> /Users/dave/lib/i386-apple-darwin8.6.1/libvf2c.a -lm -lreadline
>>> -lncurses
>>> /usr/bin/ld: can't locate file for: -lfrtbegin
>>> collect2: ld returned 1 exit status
>>> make[1]: *** [apbs] Error 1
>>> make: *** [all-recursive] Error 1
>>>
>>>
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>>