Re: [Apbs-users] problems with apbs generated surfaces/rotating/pymol
Biomolecular electrostatics software
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From: Florian S. <sch...@cr...> - 2011-07-19 11:49:02
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Thanks. Yes, turn works. Cheers, Florian On Jul 18, 2011, at 9:51 PM, Michael Lerner wrote: > Hi Florian, > > "Rotate" rotates just the atomic coordinates, but not the computed > potential. Try "turn" to move just the camera. > > Cheers, > > -Michael > > On Mon, Jul 18, 2011 at 6:02 PM, Florian Schmitzberger <sch...@cr... > > wrote: > Dear All, > > I seem to be having trouble to rotate APBS generated surfaces, > visualized in pymol. E.g. I used the command "rotate, y, 180, > mypdb.pdb" in pymol, to rotate my molecule by 180 deg. The molecule is > rotated but the surface changes appearance and does not show the > potential of the solv. accessible surface it was coloured in. > > Has anybody else seen this too? > > Cheers, > > Florian > > ----------------------------------------------------------- > Florian Schmitzberger, PhD > Biological Chemistry and Molecular Pharmacology > Harvard Medical School > 250 Longwood Avenue, Seeley G. Mudd 123 > Boston, MA 02115, US > Tel: 001 617 432 5603 > > > > > > > > > > > > > > ------------------------------------------------------------------------------ > Storage Efficiency Calculator > This modeling tool is based on patent-pending intellectual property > that > has been used successfully in hundreds of IBM storage optimization > engage- > ments, worldwide. Store less, Store more with what you own, Move > data to > the right place. Try It Now! http://www.accelacomm.com/jaw/sfnl/114/51427378/ > _______________________________________________ > apbs-users mailing list > apb...@li... > https://lists.sourceforge.net/lists/listinfo/apbs-users > > > > -- > Michael Lerner, Ph.D. > IRTA Postdoctoral Fellow > Laboratory of Computational Biology NIH/NHLBI > 5635 Fishers Lane, Room T909, MSC 9314 > Rockville, MD 20852 (UPS/FedEx/Reality) > Bethesda MD 20892-9314 (USPS) > > as of August 15th: > > Department of Physics and Astronomy > Earlham College > 801 National Road West > Richmond, IN 47374-4095 > |