Re: [Apbs-users] problems with apbs generated surfaces/rotating/pymol
Biomolecular electrostatics software
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From: Michael L. <mgl...@gm...> - 2011-07-19 01:51:41
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Hi Florian, "Rotate" rotates just the atomic coordinates, but not the computed potential. Try "turn" to move just the camera. Cheers, -Michael On Mon, Jul 18, 2011 at 6:02 PM, Florian Schmitzberger < sch...@cr...> wrote: > Dear All, > > I seem to be having trouble to rotate APBS generated surfaces, > visualized in pymol. E.g. I used the command "rotate, y, 180, > mypdb.pdb" in pymol, to rotate my molecule by 180 deg. The molecule is > rotated but the surface changes appearance and does not show the > potential of the solv. accessible surface it was coloured in. > > Has anybody else seen this too? > > Cheers, > > Florian > > ----------------------------------------------------------- > Florian Schmitzberger, PhD > Biological Chemistry and Molecular Pharmacology > Harvard Medical School > 250 Longwood Avenue, Seeley G. Mudd 123 > Boston, MA 02115, US > Tel: 001 617 432 5603 > > > > > > > > > > > > > > > ------------------------------------------------------------------------------ > Storage Efficiency Calculator > This modeling tool is based on patent-pending intellectual property that > has been used successfully in hundreds of IBM storage optimization engage- > ments, worldwide. Store less, Store more with what you own, Move data to > the right place. Try It Now! > http://www.accelacomm.com/jaw/sfnl/114/51427378/ > _______________________________________________ > apbs-users mailing list > apb...@li... > https://lists.sourceforge.net/lists/listinfo/apbs-users > -- Michael Lerner, Ph.D. IRTA Postdoctoral Fellow Laboratory of Computational Biology NIH/NHLBI 5635 Fishers Lane, Room T909, MSC 9314 Rockville, MD 20852 (UPS/FedEx/Reality) Bethesda MD 20892-9314 (USPS) as of August 15th: Department of Physics and Astronomy Earlham College 801 National Road West Richmond, IN 47374-4095 |