Re: [AMOS-help] How to visualize Arachne scaffolds in Hawkeye ?

[Mihai P. <mp...@um...>]

Jean-Marc,

I don't think we've added Arachne scaffolds to the converter.  Let me 
take a look at this either later this week or early next week and see if 
I can quickly add support for that.

Mihai

Jean-Marc Aury wrote:
> Dear Amos team,
>
> Recently, I downloaded the amos package and installed it successfully. 
> My goal is to visualize an Arachne assembly using Hawkeye.
>
> As a first step, I converted the ace file (the one generated by arachne) 
> to the Amos message format using the following command line : toAmos -m 
> assembly.mates -ace assembly.ace -o - | bank-transact -b assembly.bnk -m 
> - -f -c
> When i run Hawkeye on that bank directory, reads and contigs seem to be 
> correctly loaded.
> My question is how could i give to Hawkeye scaffolding informations from 
> arachne files ? I've read the 'toAmos' documentation and i still can't 
> figure it out.
>
> Thanks in advance for your response,
>
> Best regards,
>
> Jean-Marc
>
> -----------------------------------------------------------
> Jean-Marc Aury
> Genoscope / Centre National de Sequencage
> 2, rue Gaston Cremieux
> 91057 Evry, France
> jm...@ge...
> -----------------------------------------------------------
>
>
>
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