From: Makis L. <lad...@ce...> - 2011-10-06 09:07:07
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Dear AMOS developers, I am using AMOS converter Bank2contig to convert .afg files containing paired-end data to SAM files to use in the Tablet viewer (as shown in http://sourceforge.net/apps/mediawiki/amos/index.php?title=Bank2contig ). Nevertheless after the conversion the resulting SAM file doesn't contain flags that mark any of the reads as paired-end. When I use the Hawkeye viewer and insert the bank file from which the SAM file results my reads are recognised as paired-end. Doesn't the converter support conversion of paired-end data from bank to SAM? Thank you, Makis |