Re: [AMOS-help] about tigger in minimus2 pipeline

[Daniel S. <ds...@um...>]

Why do you have so many contigs?   If they are all only  couple thousand
base pairs you could just assemble them like they are sanger reads.

Daniel Sommer

On Mon, Mar 14, 2011 at 11:52 PM, Ba, Hengxing <Hen...@ag...
> wrote:

>  Thanks
>
> All these are contigs and no reads.
>
>
>
> Could you tell me how to merge two large contigs sets like mine?
>
>
>
> Hengxing
>
>
>
>
>
> *From:* Dan Sommer [mailto:dds...@gm...]
> *Sent:* Tuesday, 15 March 2011 4:42 p.m.
> *To:* Ba, Hengxing
> *Cc:* amo...@li...
> *Subject:* Re: [AMOS-help] about tigger in minimus2 pipeline
>
>
>
> No minimus2 can not handle millions of contigs.   Are these all contigs or
> are you including singleton reads?
>
>
>
> Daniel
>
> Sent from my iPad
>
>
> On Mar 14, 2011, at 7:45 PM, "Ba, Hengxing" <Hen...@ag...>
> wrote:
>
>  Hi
>
>
>
> Anyone could help me?
>
>
>
> I am running minimus2 pipeline to merge two large contigs sets. But the
> Tigger in pipeline has run 10 days and don’t finish yet.
>
>
>
> One contig set include 2376372 contigs and another  includes 1942129
> contigs.
>
>
>
> I wonder if it is difficult for Tigger to handle large datasets.
>
>
>
> Thanks
>
>
>
> Hengxing
>
>
>
>
>
>
>
>
>
>
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