Re: [AMOS-help] about tigger in minimus2 pipeline

[Ba, H. <Hen...@ag...>]

Thanks
All these are contigs and no reads.

Could you tell me how to merge two large contigs sets like mine?

Hengxing


From: Dan Sommer [mailto:dds...@gm...]
Sent: Tuesday, 15 March 2011 4:42 p.m.
To: Ba, Hengxing
Cc: amo...@li...
Subject: Re: [AMOS-help] about tigger in minimus2 pipeline

No minimus2 can not handle millions of contigs.   Are these all contigs or are you including singleton reads?

Daniel

Sent from my iPad

On Mar 14, 2011, at 7:45 PM, "Ba, Hengxing" <Hen...@ag...<mailto:Hen...@ag...>> wrote:
Hi

Anyone could help me?

I am running minimus2 pipeline to merge two large contigs sets. But the Tigger in pipeline has run 10 days and don’t finish yet.

One contig set include 2376372 contigs and another  includes 1942129 contigs.

I wonder if it is difficult for Tigger to handle large datasets.

Thanks

Hengxing







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