Re: [AMOS-help] extract contig-info from AMOS bank

[Michael S. <mic...@gm...>]

Hi Georg,

The simplest way to get this information is with 'dumpmates prefix.bnk >
prefix.mates'

The mates file contains the ids of the mated reads, and the id of their
library:
read1 read2 libraryid

Good luck,

Mike Schatz




On Mon, Nov 2, 2009 at 10:59 AM, Georg Hemmrich-Stanisak <
ghe...@zo...> wrote:

> Dear AMOS team,
>
> I recently started using AMOS and maybe simply missed it when looking
> through the various possibilities to parse/extract info from AMOS-banks
> ...  but is there a possibility to extract not only contigs and their
> corresponding reads but also the information from which library the
> reads originate? I know that Hawkeye displays this info but is there a
> way to get a file output?
>
> Thank you very much in advance!
>
> Cheers,
>
> Georg
>
>
> --
> Dr. Georg Hemmrich
>
> Workgroup of Prof. Dr. Bosch
> Zoological Institute
> Cell- and Developmental Biology
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>
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> Mail: ghe...@zo...
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>
>
>
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