Re: [AMOS-help] How can i install amos with qt ?

[Michael S. <mic...@gm...>]

Hi,

Since you have qt installed in a non-standard location, you'll have to add
that path to your LD_LIBRARY_PATH before you can run Hawkeye:

(in bash)
$ export LD_LIBRARY_PATH=/usr/local/qt/lib:$LD_LIBRARY_PATH

The error you see from AMOScmp is expected, you have to provide it with a
file of sequence data stored in afg format. Normally you use toAmos or
tarchive2amos to do the conversion.

See:
http://amos.sourceforge.net/docs/converters/toAmos.html
http://amos.sourceforge.net/docs/converters/tarchive2amos.html
http://amos.sourceforge.net/docs/pipeline/AMOScmp.html

Good luck!

Michael Schatz



On Sat, Apr 25, 2009 at 11:26 AM, zhihua zheng <zhi...@gm...>wrote:

> Hi staff,
>
> Thanks for your reply,
>
> Yes. there have a file /usr/local/qt/bin/moc, and I can finished install
> using :
> ./configue --prefix=/usr/local/ --wtih-Qt-dir=/usr/local/qt
>
> but I can not use it ....
>
>
> [eflyer@zzhiou amos-2.0.8]$ hawkeye
> hawkeye: error while loading shared libraries: libqt.so.3: cannot open
> shared object file: No such file or directory
>
>
> [eflyer@zzhiou amos-2.0.8]$ AMOScmp
> The log file is: runAmos.log
> Cannot substitute variable PREFIX
>
>
> attachment is my config.log file , please check it for me , many thanks!
>
>
>
> Regards,
>
> zhihua zheng
> 20090425
>
>
>
>
> Hi,
>
> Is there a file /usr/local/qt/bin/moc? If so, try with ./configure
> --prefix=/usr/local/ --with-Qt-dir=/usr/local/qt It should not be necessary
> to specify all the qt options. If that doesn't work, can you send the file
> "config.log". This will explain why the configuration failed.
>
> Thanks for your interest,
>
> Michael Schatz
>
> On Thu, Apr 23, 2009 at 9:24 AM, Michael Schatz <mic...@gm...>wrote:
>
>> Hi,
>>
>> Is there a file /usr/local/qt/bin/moc? If so, try with ./configure
>> --prefix=/usr/local/ --with-Qt-dir=/usr/local/qt It should not be necessary
>> to specify all the qt options. If that doesn't work, can you send the file
>> "config.log". This will explain why the configuration failed.
>>
>> Thanks for your interest,
>>
>> Michael Schatz
>>
>>
>>
>> On Sat, Apr 18, 2009 at 1:35 PM, zhihua zheng <zhi...@gm...>wrote:
>>
>>> Hi staff,
>>>
>>> I am a bioinformatics beginner, I want to install AMOS on my local
>>> machine, but fail if I want to include , does anyone can help me! many
>>> thanks!
>>>
>>>
>>> my qt install path: /usr/local/qt
>>>
>>> my configure is :
>>>
>>> ./configure
>>>       --prefix=/usr/local
>>>       --with-Qt-dir=/usr/local/qt
>>>       --with-Qt-include-dir=/usr/local/qt/include
>>>       --with-Qt-bin-dir=/usr/local/qt/bin
>>>       --with-Qt-lib-dir=/usr/local/qt/lib
>>>       --with-Qt-lib=/usr/local/qt/lib/libqt.so.3.3.6
>>>
>>> =======================================
>>>
>>> output
>>> .....
>>>
>>> checking for Qt... yes
>>> checking whether Qt works... no
>>>
>>> .....
>>>
>>>
>>> WARNING! Qt3 toolkit malfunctioning but is required to run AMOS GUIs
>>>    try compiling GUIs manually or reinstall Qt3 toolkit to build GUIs
>>>    see config.log for more information on what went wrong
>>>
>>>
>>>
>>>
>>>
>>> something wrong with me?  many thanks!!!
>>>
>>>
>>> regards!
>>>
>>>
>>> zhihua zheng
>>> 20090419
>>>
>>>
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>>
>