vcf2maf

vcf2maf is a Perl-based tool developed by the Memorial Sloan Kettering Cancer Center to convert Variant Call Format (VCF) files into Mutation Annotation Format (MAF) files. This conversion standardizes variant annotations, facilitating downstream analyses in cancer genomics.

Features

Converts VCF files to standardized MAF format
Maps variants to a single gene isoform for consistency
Integrates with Ensembl's Variant Effect Predictor (VEP)
Allows customization of transcript annotations
Supports annotation with custom ExAC VCFs
Provides auxiliary scripts for format conversions

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License

MIT License

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