Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning. Planning genetic constructs with many parts and assembly steps, such as recombinant metabolic pathways, are often difficult to properly document as is evident from the poor state of documentation in the scientific literature. The pydna python package provide a human-readable formal description of cloning and genetic assembly strategies in Python which allow for simulation and verification. Pydna can be used as executable documentation for cloning.

Features

  • Restriction digestion
  • Gel electrophoresis of DNA with generation of gel images
  • Homologous recombination
  • Gibson assembly
  • Golden gate assembly (in progress)
  • Primer design and PCR

Project Samples

pydna Screenshot 1

Project Activity

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Categories

Data Visualization

License

MIT License

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pydna Web Site

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Additional Project Details

Programming Language

Python

Related Categories

Python Data Visualization Software

Registered

2023-12-22
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