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Code for modeling estimated deaths and infections for COVID-19 from "Estimating the effects of non-pharmaceutical interventions on COVID-19 in Europe", Flaxman, Mishra, Gandy et al, Nature, 2020, the published version of our original Report 13. This is the release related to our Tiers paper, where we use the latent factor model to estimate the effectiveness of tiers systems in England. Peer-reviewed version is to be out soon. All other code is still the same for previous releases. The code should be run in full mode to obtain credible results. Not running a full run to estimate anything is not recommended and discouraged. Only a full run should be used to get results.
Features
- A Docker image providing all model dependencies is available
- The results are stored in two folders results and figures
- Results have the stored stan fits and data used for plotting
- Code for modelling estimated deaths and infections for COVID-19
- Figures have the images with daily cases
- Provides daily death and Rt for all countries
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License
MIT LicenseFollow covid19model
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