Search Results for "hydrogen"
Sort By:
Showing 30 open source projects for "hydrogen"
View related business solutions-
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
-
Our Free Plans just got better! | Auth0You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.
-
1
Hydrogen
An advanced drum machine with pattern-based programming
Hydrogen is an advanced drum machine for GNU/Linux, Windows and Mac OS X. It's main goal is to bring professional yet simple and intuitive pattern-based drum programming. -
2
HomotopyContinuation.jl
A Julia package for solving systems of polynomials
...Homotopy continuation methods allow us to study the conformation space of molecules as for example cyclooctane (CH₂)₈. This molecule consists of eight carbon atoms aligned in a ring, and eight hydrogen atoms, each of which is attached to one of the carbon atoms. -
3
Hydrogen Bond Analysis Tool (HBAT)
HBAT 2 is migrated from PERL to Python.
HBAT(Hydrogen Bond Analysis Tool) is a tool to automate the analysis of hydrogen bonds present in a PDB Structure file. HBAT 2 is migrated from PERL to Python. Latest Documentation: https://hbat.abhishek-tiwari.com/ Web Server Version: http://hbat-web.abhishek-tiwari.com Latest Github Release: http://github.com/abhishektiwari/hbat Citation: Tiwari, A., & Panigrahi, S. -
4
Hex
Hydrogen-Electron Collisions
A computer code for simulation of electron-hydrogen scattering. Contains three (more or less) finished sub-programs: (a) “hex-ecs” which solves the Schrödinger equation in the B-spline basis, (b) “hex-dwba” which computes scattering variables for high energies using the distorted wave Born approximation of the first order and finally (c) “hex-db” which is a user interface to a plain SQLite database, where the intermediate results are being stored, and which is used to extract derived quantities like a cross section from it. ... -
Go From AI Idea to AI App FastAccess Gemini 3 and 200+ models. Build chatbots, agents, or custom models with built-in monitoring and scaling.
-
5
We developed IBEIP, an intelligent and accurate tool for identifying B cell dominant epitope regions based on Ag-nAb complex crystal structures from PDB database. During epitope mapping, IBEIP analyzes four molecular interactions (van der Waals forces, buried surface area, hydrogen bonds, and electrostatic interactions) between antigen and antibody complexes to ensure accuracy. IBEIP uses a hierarchical iterative merging model to merge highly overlapping epitopes and identify the hot nAb binding region as the B cell dominant epitope region. IBEIP is also applicable to analyzing high-mutant antigens and complex epitope structures that span adjacent monomers. ...
-
6
GromacsProSuite
Graphical User Interface for Gromacs
...Built-in monitoring tracks CPU, RAM, and disk usage to ensure stable performance during parallel processing. Beyond simulation execution, it includes advanced trajectory processing and analysis tools such as RMSD, RMSF, SASA, clustering, PCA, hydrogen-bond analysis, Ramachandran plots, and FEL mapping. With integrated visualization and plotting utilities, it offers a unified platform for researchers, educators, and students to perform complete MD workflows efficiently and reproducibly. Our Goal is to bring MD simulations to every biologist's toolkit. -
7
Hydrogen
Run code interactively, inspect data, and plot
Hydrogen is an interactive coding environment that supports Python, R, JavaScript and other Jupyter kernels. Hydrogen was inspired by Bret Victor's ideas about the power of instantaneous feedback and the design of Light Table. Running code inline and in real-time is a more natural way to develop. By bringing the interactive style of Light Table to the rock-solid usability of Atom, Hydrogen makes it easy to write code the way you want to. -
8
Pearl Studio 9
A Loaded Recording Studio Out of the box
64 bit LTS OS running the 5.4 kernel. -
9
CheUP
Gromacs Topology Builder - OPLS AA Based. Support many charge model
...Calculate CM1A – LBCC and CM5 Charge Model 4. Read many files formats structure using Open Babel library and Quantum Output (MOPAC7.1, ORCA, GAUSSIAN, FIREFLY) 5. Nice Ways Adding Hydrogen -
AI-powered service management for IT and enterprise teamsGive your IT, operations, and business teams the ability to deliver exceptional services—without the complexity. Maximize operational efficiency with refreshingly simple, AI-powered Freshservice.
-
10
HaDeX
Tools for processing, analysis and visualization of HDX-MS experiments
Tools for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by Mass Spectrometry experiments (HDX-MS). HaDeX introduces a new standardized and reproducible workflow for the analysis of the HDX-MS data, including novel uncertainty intervals. Additionally, it covers data exploration, quality control and generation of publication-quality figures. All functionalities are also available in the HaDeX web server (http://mslab-ibb.pl/shiny/HaDeX/) or the HaDeX R package. -
11
📝 MIUI Evolution is a project developed by Gerimis and Kenzo ID Team. 📝 Porting MIUI Nougat from device Hydrogen (Mi Max) or Helium (Mi Max Prime) to Kenzo (Redmi Note 3 Pro) 📌 Website: http://bit.ly/MIUI-Evolution 🍺 Special Thanks: 👤 Mank Abo 👤 Mr. Jopra 👤 Sego Pecel 👤 Badroen Solo 👤 Ezhasuke 👤 M. Taupik 👤 Turaturu 👤 Eni Wulandari 👤 Vickry 👤 Eka Restu A Putra 👤 BadjinganGuy 👤 Khusnan 👤 Bian 👤 Mon's Semar Mesem 👤 MIUI Kenzo ID Team 👤 MiFans Indonesia 👤 Xiaomi Redmi Note 3 Pro User 👤 Etc
-
12
ElemenTable - Periodic Table
Simple colored and interactive Periodic Table of Elements
ElemenTable is a colorful periodic table of elements application for Windows (requires .NET Framework v.4.5 or higher). It gives many important information, e.g. atomic mass or electronegativity, about all current chemical elements from Hydrogen [1] to Oganesson [118]. All elements are ordered in a colorful periodic table layout which can be changed in color to show either the element groups, the element states or the element types. The data of the chemical elements is hosted at https://github.com/bluegrams/Periodica.Data. Also have a look at the new periodic table app for Windows 10 with many more features at https://www.microsoft.com/store/apps/9PB2TD7P6DT3. -
13
-
14
AmberAnalysis
Command-line tools for analyzing Amber Molecular Dynamics simulations.
...Can detect the position of a planar interface between two substances and plot density relative to that interface for atoms of an arbitrary type, name, charge, or residue. Orientation of three-atom residues (such as water) may be calculated and plotted. Uses parallel processing to detect hydrogen bonds, and can produce a bonding profile. Output files can be displayed as graphs using the included matplotlib python graphing script. -
15
Pearl Linux 3.5
OS X Alternative that installs on most new or old computers
The complete OS X styled operating system ready to go with the best open source software available today. Pearl Linux 3.5 32 bit will install on most new and used desktops, laptops, notebooks and netbooks. All of the Pearl Linux releases are modeled from Mac OS X Snow Leopard addition. Newer OS X styles available through theming. Customize this super stable feature packed Mac OS X styled system with compiz desktop effects with both dark and light themes, Nitrogen to change your HD... -
16
ddtFoam
OpenFOAM solver to simulate the deflagration-to-detonation transition
This solver represents an addition to the open-source CFD package OpenFOAM. The solver is used to simulate the deflagration-to-detonation transition in hydrogen-air mixtures. Prominent features are described below. Additional description is available in the pdf file included. For a more detailed description download Florian Ettner's thesis (in German) from http://www.td.mw.tum.de/tum-td/de/forschung/dissertationen/download/I2013/Ettne13.pdf [8.6 MB] A shorter description (in English) can be found in the following publiction: http://www.hindawi.com/journals/jc/2014/686347/ -
17
Fluid Gravity 3way
there are 3 observers to every curve, each seeing the other 2
I recently dug up some of my old simulations after to my surprise 3SAT and a theoretical expansion of boltzmann statistics reminded me I already simulated something like that but I didnt know how good a simulation it was. Check how the varying density and shape of electron clouds and soliton-like or fluid drop like blobs of field gradually start to point outward and get thinner, like a soliton is bell curve shaped as seen from outside. More importantly, compare the 2 halfs of electron cloud... -
18
Bingul Project
Bingul project is for Tubitak Electrical and Hydrogen Cars
Bingul project includes embedded and c++ files to control and monitor remote car datas at racing. Usually most of team have not got a communication system so i believe this project solve them problems. -
19
binana
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyz
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyzing ligand binding. The program identifies key binding characteristics like hydrogen bonds, salt bridges, and pi interactions. As input, BINANA accepts receptor and ligand files in the PDBQT format. PDBQT files can be generated from the more common PDB file format using the free converter provided with AutoDockTools. As output, BINANA describes ligand binding. NOTE: The latest version of BINANA is now hosted at http://git.durrantlab.com/jdurrant/binana . ... -
20
SBION2
Analyses of Salt Bridges from Multiple Structure Files, Version 2
Program: SBION2- Analyses of Salt Bridges from Multiple Structure Files, Version:--v2.0 - improved version of SBION: Gupta et al Bioinformation, 10, 164-166, 2014 Author:c)--Parth Sarthi Sen Gupta, Arnab Nayek, Shyamashree Banerjee, Pratyay Seth, Vishma Pratap Sur, Sunit Das,Chittran Roy and Amal Kumar Bandyopadhyay; Department of Biotechnology,The University of Burdwan, India -
21
QUDeX-MS
Hydrogen/deuterium exchange estimation for isotopic fine structure MS
Hydrogen-deuterium exchange coupled to mass spectrometry permits analysis of structural dynamics, stability, and molecular interactions of proteins. Resolving isotopic fine structure during mass spectrometry has been recently demonstrated to allow direct detection and quantification of deuterium incorporation distinct from peaks corresponding to non-deuterium incorporated natural abundance heavy isotopomers. -
22
PyInteraph
analysis of interaction networks in structural ensembles of proteins
PyInteraph is a software research tool for the analysis of structural communication protein ensembles. It has been designed to analyze MD and structural ensembles with attention to binary interactions between residues, such as hydrogen bonds, salt bridges, and hydrophobic interactions. Once the interactions have been calculated, it is able to use different classes of intra- and intermolecular interactions, combined or alone, to calculate comprehensive interaction graphs. These graphs can be thoroughly analyzed using included network analysis tools, which are able to point out the most important features of the network for the discovery of paths of structural communication in proteins. ... -
23
rumpf-kit-sampled-sounds
free (cc-by) sampled percussion sounds
free (cc-by) sampled percussion sounds. format: flac, 48000Hz, 24bit for use with linuxsampler, hydrogen drum machine and similar tools -
24
PreDyJE
PreDyJE is a python tool to calculate dehydrons in a protein.
PreDyJE is a python tool to calculate dehydrons in a protein PDB. Dehydrons are solvent-exposed hydrogen bonds. It runs in command-line, but a Pymol script has been developed as well. Dehydrons can be visualized in Pymol with another plugin. Structure of the program is available in the documentation. -
25
The purpose of this program is to plot the waveforms of the hydrogen wave function. The program has 4 option's. First, plotting the radial function, second, plotting the radial probability, third, 2d wave function,last, 3d wave function.
