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Showing 41 open source projects for "hmm"
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statsmodels
Statsmodels, statistical modeling and econometrics in Python
... of the one-parameter exponential family distributions. Markov switching models (MSAR), also known as Hidden Markov Models (HMM). Vector autoregressive models, VAR and structural VAR. Vector error correction model, VECM. Robust linear models with support for several M-estimators. statsmodels supports specifying models using R-style formulas and pandas DataFrames. -
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gse
Go efficient multilingual NLP and text segmentation
Go efficient multilingual NLP and text segmentation; support English, Chinese, Japanese and others. Gse is implements jieba by golang, and try add NLP support and more feature. Support common, search engine, full mode, precise mode and HMM mode multiple word segmentation modes. Support user and embed dictionary, Part-of-speech/POS tagging, analyze segment info, stop and trim words. Support multilingual: English, Chinese, Japanese and others. Support Traditional Chinese. Support HMM cut text use... -
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MaryTTS
An open-source, multilingual text-to-speech synthesis system
... languages are in preparation. MaryTTS comes with toolkits for quickly adding support for new languages and for building unit selection and HMM-based synthesis voices. -
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hiddenDomains
hiddenDomains: a modern HMM to identify ChIP-seq enrichment
hiddenDomains uses a Hidden Markov Model to identify enriched domains in ChIP-seq data. It accepts BAM files for input and can perform an analysis with or without control data. The output is a BED file, ready for the UCSC genome browser, that contains the domains and is color coded according to their posterior probabilities. -
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GPRED-GC
a Gene PREDiction model accounting for 5'-3' GC gradient
A new hidden Markov model (HMM)-based ab initio gene prediction tool for finding genes with highly variable GC contents such as the genes with negative GC gradients in grass genomes. -
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HMM-GRASPx
HMM Profile-based targeted assembly and alignment for metagenomics
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GENSENG
GENSENG is a software detecting CNVs from NGS data
GENSENG is a software detecting CNVs(Copy Number Variations) from NGS(Next Generation Sequencing) data. We have uploaded the data preparation codes. Please download it from Files folder. -
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karkinos
Tumor genotyper for Exome sequence that detects SNV,CNV, aTumor purity
karkinos is tumor genotyper which detects single nucleotide variation (SNV), integer copy number variation (CNV) and calculates tumor cellularity from tumor-normal paired sequencing data. Accurate CNV calling is achieved using continuous wavelet analysis and multi-state HMM, while SNV call is adjusted by tumor cellularity and filtered by heuristic filtering algorithm and Fisher Test. Also, Noise calls in low depth region are removed using EM algorithm. -
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hts_engine is software to synthesize speech waveform from HMMs trained by the HMM-based speech synthesis system (HTS). This software is released under the Modified BSD license.
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Ansj Chinese word segmentation
Ansj word segmentation
The real java implementation of ict. The word segmentation effect is faster than the open source version of ict. Chinese word segmentation, name recognition, part-of-speech tagging, user-defined dictionary. This is a java implementation of Chinese word segmentation based on n-Gram+CRF+HMM. The word segmentation speed reaches about 2 million words per second (tested under mac air), and the accuracy rate can reach more than 96%. At present, it has realized the functions of Chinese word... -
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PALM
Probabilistic natural mapping for gene based association study.
PALM is a software that conducts gene-based association analysis. PALM exploits Hidden Markov Models (HMM) to capture the inner genomic structures. Then, unique gene features (termed "palm prints") are extracted for each gene set by calculating the natural gradient. Then palm-prints are tested with chi-square significance test. -
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Sinsy
HMM-based singing voice synthesis system
Sinsy is an HMM-based singing voice synthesis system. This software is released under the Modified BSD license. -
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High-order HMM in Matlab
Implementation of duration high-order hidden Markov model in Matlab.
Implementation of duration high-order hidden Markov model (DHO-HMM) in Matlab with application in speech recognition. -
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The General Hidden Markov Model Library (GHMM) is a C library with additional Python bindings implementing a wide range of types of Hidden Markov Models and algorithms: discrete, continous emissions, basic training, HMM clustering, HMM mixtures.
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HMM-FRAME
Frameshift detection and correction for next-generation sequences
HMM-FRAME is designed to accurately locate and correct frameshift errors in next-generation sequencing (NGS) data using an augmented Viterbi algorithm on profile hidden Markov models (profile HMMs). By correcting the frameshift errors, it can classify more NGS sequences into their native protein domain families. -
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ML Toolbox
Matlab toolbox for Machine Learning
Matlab toolbox designed to simplify training, validation and testing process for multiple probabilistic models, including SVM, HMM and CRF. The toolbox is designed to work with Matlab Distributed Engine, allowing a distributed training of the probabilistic models. -
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HMM Speech Recognition in Matlab
A speech recognition system using Matlab/Simulink/Stateflow.
This project provide hidden Markov model speech recognition system by using Matlab/Simulink/Stateflow. -
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HMM Speech Recognition in Java
HMM Speech Recognition in Java
HMM Speech Recognition in Java -
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High-order HMM in Java
A duration high-order hidden Markov model (DHO-HMM) in Java.
This project provides an implementation of duration high-order hidden Markov model (DHO-HMM) in Java. It is compactible with JDK 5 & 6. It was used in the author's research on speech recognition of Mandarin digits. There are some Chinese words in this project and I am afraid that I don't have enough time to translate to English recently. -
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Parallel GENSENG is a parallel implementation of the GENSENG software for detecting copy number variations from high-throughput sequencing data. This software runs exactly as the original code does, except that it utilizes multiple threads where possible. OpenMP was used for multi-threading so changes to the original code were minimal. For a demo, please download the sample data linked to below and follow the README from the tarball. Example read count...
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CGI-HMM
Find CpG island by HMM
Find CpG island for whole genome/chromosome by Hidden-Markov Mode -
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Smart Autorun Cleaner
Smart Autorun Cleaner, Most powerful gadget against autorun-malwares.
Smart Autorun Cleaner, Most powerful gadget against autorun-malwares. You can use 500 minutes free trial full function before purchase, don't worry when you use software, your time will be deducted. With this great gadget you can restore your hidden files (Hidden files duo to viruses) automatically in moments and absolutely clean your disks(memory disks and...) as easy as plug your memory disks in usb drives and remove them after seconds, this can be great hmm? Please carefully read help... -
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CORECLUST
CORECLUST (COnservative REgulatory CLUster STructure)
CORECLUST uses an HMM-based technique to predict cis-regulatory modules (CRMs) given known motifs for a set of system-specific transcription factors (TFs). Given regulatory regions of orthologous and/or co-regulated genes, CORECLUST constructs a model describing conserved rules of relative location of TF binding sites (CRM structure). The constructed model may be used for the CRM prediction, as well as for the investigation of the regulatory grammar of the system of interest. -
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SRM2 Sound Recognizer Mobile 2
A Sound Recognition Framework developed to J2ME plataform
The SRM Framework 2 was developed for the J2ME platform supporting sound recognition dependent and speaker-independent, through the recognition techniques DTW (Dynamic Time Warping) and HMM (Hidden Markov Models), in addition to providing support to the import and export of data any stage of recognition enabling the use of external resources as well as the tool running steps on remote terminals. It has the following characteristics: - DTW - HMM (Discrete Models) - Suports Sound in PCM... -
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CvHMM
Discrete Hidden Markov Models based on OpenCV
This project (CvHMM) is an implementation of discrete Hidden Markov Models (HMM) based on OpenCV. It is simple to understand and simple to use. The Zip file contains one header for the implementation and one main.cpp file for a demonstration of how it works. Hope it becomes useful for your projects.