Search Results for "biopython"

Python course (in Spanish) for Proteomics analysis using basically Jupyter NoteBooks. For more information, you can have a look at the readme.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/p4p/code/ci/default/tree/readme.md

...Lets say you want the amino acid sequence of range 128-387 from a 1000 amino acid protein - this script will help you to avoid counting mistakes by just showing you the specified sequence in amino acids and coding DNA base pairs (ideal for amplification primer design) of a specified Uniprot ID. - Requires BioPython (3) and Bioservices Package (4) (1) The UniProt Consortium UniProt: a hub for protein information Nucleic Acids Res. 43: D204-D212 (2015). (2) RefSeq: an update on mammalian reference sequences. Nucleic Acids Res. 2014 Jan 1;42(1):D756-63. (3) Cock PJ et al. Bioinformatics (2009) (4) Cokelaer et al, Bioinformatics (2013)

Set of python3 scripts and windows batch scripts which use extensively NCBI Blast+ package and BioPython module to perform algorithm known as reciprocal blast. README: https://sourceforge.net/projects/reciprocalblastwin32/files/

We developed a universal approach and tool designated Geptop, based on orthology and phylogeny, to offer gene essentiality annotations. The web server and standalone version of Geptop are available at http://cefg.uestc.edu.cn/geptop/ free of charge. This package is dependent on Python, Biopython and BLAST+. Citation: Wei W, Ning L-W, Ye Y-N, Guo F-B (2013) Geptop: A Gene Essentiality Prediction Tool for Sequenced Bacterial Genomes Based on Orthology and Phylogeny. PLoS ONE 8(8): e72343. doi:10.1371/journal.pone.0072343

Bioinformatic C++ library providing a central engine to other bio* libraries (BioPerl, BioPython, BioJava).