Search Results for "coordinates" - Page 8
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Showing 341 open source projects for "coordinates"
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PyVCI
Vibrational configuration interaction code for simulating IR spectra
The PyVCI program package is a general purpose open-source code for simulating accurate molecular spectra, based upon force field expansions of the potential energy surface in normal mode coordinates. It includes harmonic normal coordinate analysis and vibrational configuration interaction (VCI) algorithms, implemented primarily in Python for accessibility but with time-consuming routines written in C. Coriolis coupling terms may be optionally included in the vibrational Hamiltonian. Quartic force fields are obtained from the PyPES library of high quality analytical potential energy surfaces (http://sourceforge.net/projects/pypes-lib) or by numerical differentiation of analytic second derivatives generated using the GAMESS quantum chemical program package (http://www.msg.ameslab.gov/gamess/). -
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GMES
GMES is a free Python package for FDTD electromagnetic simulations.
GMES is a free finite-difference time-domain (FDTD) simulation Python package developed at GIST to model photonic devices. Its features include simulation in 1D, 2D, and 3D Cartesian coordinates, distributed memory parallelism on any system supporting the MPI standard, portable to any Unix-like system, variuos dispersive ε(ω) models, CPML absorbing boundaries and/or Bloch-periodic boundary conditions, and arbitrary material and source distributions. GMES officially stands for GIST Maxwell’s Equations Solver. -
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iScroll
Smooth scrolling for the web
...The library goes beyond basic scrolling by supporting zooming, panning, infinite scrolling, parallax effects, and carousel-style interactions. Developers can control scroll coordinates, customize easing behavior, and listen to detailed scrolling events during user interaction. The project includes several builds, such as the general version, a lighter mobile-focused version, a probe version for tracking scroll position, and a zoom-enabled version. The repository is archived and read-only, so it is best suited for legacy projects, reference use, or maintaining existing interfaces that already depend on iScroll. -
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Visualization of Protein-Ligand Graphs
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
...The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/ -
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Icarus Scene Engine
3D .NET engine for Windows, Linux, Mac
Icarus Scene Engine is a cross-platform, CLS-compliant 3D framework, integrating open source APIs into a cohesive all-open-source, all .NET solution. For Windows, MacOSX & Linux. Uses OpenTK, OpenGL, OpenAL APIs for graphics and audio. Runs on Mono/.NET. Links to FFMpeg for streaming video, and FreeType as a temporary conversion mod to bring fonts into a native XML format. Binary builds of Icarus will be infrequent, roughly every 18 months or so, the GIT code updates regularly on a... -
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GeoNet is a software to perform rigorous least squares adjustment of topographic (Total station, GNSS and levels) observations directly in a global reference frame.
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PyWham
Python implementation of the Weighted Histogram Analysis Method (WHAM)
Latest version is 1.2, released Mar 12, 2016 PyWham is a flexible and fully customizable implementation of the Weighted Histogram Analysis Method (WHAM) in Python 2. PyWham has been carefully designed with flexibility in mind. Some of its features are: (1) any number of reaction coordinates, (2) any form of potential, (3) compatibility with Python syntax and Python math module and (4) support for user-defined functions. Knowledge of Python is not required. -
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Inkscape Map
From Inkscape SVG files to HTML image map or coordinate list
A simple tools to generate HTML imagemap or coordinates list (eg. to be inserted into a database) from an Inkscape SVG file. Also usefull for creating imagemap and generate area-coloured images on the fly using the coordinates (eg. in PHP with GD library). It requires Java to run. -
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GPX to UTM reference converter
Convert your GPX coordinates to UTM reference coordinates
Just select Garmin GPX file, and software automatically converts waypoints to UTM reference coordinates and saves to the file specified. Requirements: JAVA 8 and Visual Studio Redistributable 2010 x86 -
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PyPES Library
Library of analytic potential energy surfaces
...The PyPES code enables the generation of energy derivatives to 6th order about any point on the potential energy surface in a range of common coordinate systems, including curvilinear internal, Cartesian and normal mode coordinates. For portability, FORTRAN, C, MATLAB and Mathematica wrappers are provided to interface with PyPES, reading in PyPES-generated Cartesian and normal mode derivative data via a text interface. -
11
ppienergy
Compute Protein Protein Interaction Energy Profile
...In the present work, we have developed a new approach to explore the energy landscape of protein-protein interactions by employing a rapid modified DFT-D approach using the atomic coordinates obtained from X-ray and NMR spectroscopy data. The distance energy plots of contact residues in the interacting regions of several experimentally validated protein-protein complexes were computed to generate energy landscapes. Cumulative energy profiles of protein-protein complexes were generated for observing trends in the context of geometry (parallel, terminal), surface areas (large, medium, small) and interacting partners (homomer, heteromer). -
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Buddy Rock Geotools
Toolbox for geoscientists and geo enthusiasts
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pgn4web-cb coordinates and buttons
pgn4web modification, added coordinates and interface buttons
pgn4web-cb is a modification of pgn4web, it adds coordinates and 5 Interface buttons as well as a moveindicator. You need to download original project FIRST! Go to http://pgn4web.casaschi.net/ and download pgn4web, then download this modification. Full list of Modifications: Added Coordinates A-H,1-8 Added buttons for: -Rotate Board, -Highlight last move on/off -Show/Hide comments and variations -Keyboard Help -Shortcut Squares Help Added Variables: -MoveIndicator: if set true, shows who is to move in lower left corner -ShowMovesInNewLine: if set true, moves will be shown in new lines, like on a sheet of paper -Notation: Sets notation language, currently only "German" and "GermanShort" is supported. ... -
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QNetMap
QNetMap is the library for displaying the map and the objects on it
...User's own raster maps can also be used. QNetMap supports layers so you can mix maps from different servers. To enrich the map presentation you can draw your own objects in the given coordinates. The development of the library was supported by "Sintels" LLC (ЗАО "Синтелс" - http://sintels.ru) and OJSC "T8" (ОАО "Т8" - https://t8.ru). Written by Sergey Shumeyko and Sergey Vasyutin. -
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mywebglflightspace chung is a free webgl 3D space flight simulator game with shaders using html5 and javascript . Every single spot in the sky is an explorable stellar system with real coordinates and color from hyparcos database (1000 nearest stars). Explore distant nebula s .You can also shoot at other spaceships and destroy them . Can run on a small netbook.
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glu
Deployment Automation Platform
...Under the hood it coordinates distributed nodes, tolerating partial failures while continuing to drive toward the target state. By separating deployment recipes from environment specifics, glu encourages repeatable, testable releases for multi-service stacks. -
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circlize
Circular visualization in R
circlize is an R package for creating circular visualizations (plots laid out in circular coordinate systems) in a very flexible way. It implements many types of plots using circular layouts: chord diagrams, circular heatmaps, arcs/links between sectors, genomic data visualization, etc. It provides low-level drawing functions as well as high-level functions to build complex visualizations. It’s often used in genomics, network analysis, or other fields where relationships among categories or... -
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MDA
Molecular Dynamics Analyzer (MDA)
...The particle fitting routine is provided by an external library written in C. The results can be exported into the Matlab Workspace or the trackID, frameID and xyz coordinates are saved into files. -
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Morpheus
MORPHEUS is a 3D MPI-OPENMP hydrodynamic simulation code
...O'Brien (2008-2014) The University of Manchester Current version 1.33 - 07/2014 MORPHEUS is a 3D MPI-OPENMP Eulerian second-order Godunov hydrodynamic simulation code in cartesian, spherical and cylindrical coordinates which includes radiative cooling and gravity. -
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Open Postcode
Geolocation Postcode Algorithm
A geolocation code for Ireland and elsewhere. Fully extensible. Encoding coordinates into single base-25 characters. -
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Auto Primer3
Automatically design primers to genes/coordinates using primer3.
PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/autoprimer3) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/autoprimer3/releases/latest). AutoPrimer3 retrieves gene information, DNA sequences and SNP information from the UCSC genome browser and uses primer3 to automatically design primers to genes or genomic coordinate targets. Primers may be designed using information from any of the UCSC hosted genomes... -
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Sunwait
Sunrise/sunset utility for Windows Task Scheduler or cron.
Sunwait calculates sunrise or sunset times with civil, nautical, astronomical and custom twilights. It is intended for use in home automation with Windows Task Scheduler or cron. Use it to turn lights on *before* it gets dark! The program can wait from invocation until the event specified on the command line occurs or it can return immediately indicating if it is day or night. It's best to schedule Sunwait to run a little before the earliest opportunity for the event to occur each year... -
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Gen3D
A tool for 3D genome and chromosome structural model construction
Gen3D is an application designed to determine three-dimensional genome and chromosome models. It uses chromosomal contact data to construct three-dimensional conformations. This method can generate three-dimensional chromosomal models satisfying a large portion of chromosomal contacts. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project... -
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Java Geolocation GPS Tracking
In development GPS location tracking
Java Geo location GPS tracking still in early stage, intended to read GPS coordinates from a GPS device and visualize the location on an Java Embedded Chromium Browser, Capabilities may not support yet due to the GoogleMaps API Restrictions which not given to JCEF (Java Chromium Embedded API) for Free. You need to activate billing or payment option even for the free plan of the GoogleMaps API to work. PENDING Optimizations with Excelsior JET Technologies to improve and protect project integrity of the binary release version when it's available. ... -
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Spherical Harmonics Manipulator
Software to make fast synthesis of spherical harmonics global models
This software computes synthesis of spherical harmonics models on sparse coordinates or grids (provided in a geodetic or geocentric reference system). It exploits basic parallelism using openmp directives. A solution with MPI has not be taken into account since it cannot be so easily manageble by final users.
