Search Results for "python tool" - Page 54
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Showing 2105 open source projects for "python tool"
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AmpliMethProfiler
CpG methylation analysis of amplicons from bisulfite sequencing
ampliMethProfiler tool provides an easy and user friendly way to extract and analyze the epihaplotype composition of reads from targeted bisulfite sequencing experiments. Specifically, ampliMethProfiler provides an easy and user friendly way to extract and analyze the epiallelic composition of reads from targeted bisulfite sequencing experiments. ampliMethProfiler is written in python language and requires a local installation of BLAST and QIIME tools. -
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Inferact
File-tagging tool coded in Python.
Tag, search (e.g., by similarity), manage data collections of your choosing. Currently optimized for music and image data. Uses sha1 hashes for identification. Please use additional programs such as: IrfanView (http://www.irfanview.com) and MPC (https://mpc-hc.org) for media handling and a console with unicode support, like ConEmu (https://conemu.github.io). -
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CWOnly
Python program for sending custom CW macros via serial port
This is a project I started to learn Python and Tkinter. It all started when I received a PI for Christmas in 2015. Over Christmas breaks I have time away from work to play on projects and I have taken an interest in programming. There are many fine ham radio programs out there. This is just a learning tool. The code was written in Python2.7 and bundled with Pyinstaller. -
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EpiMINE
program for mining epigenomic data
...This application performs genome wide based quantitative and correlative analysis between different annotated or raw chip-seq like datasets in the regions of interest (RI). Apart from this the tool takes the advantage in linking results with expression data. It is available both in graphical user interface and in command line form. It can be executed in Mac and Linux platforms. Dependencies: python >= 2.7 version python packages: rpy2(v2.8.1), pysam(>0.8.4), pybedtools(v0.7.7) and wxpython (only for GUI form) R with following packages: gplots, ggplot2, RColorBrewer, FactoMineR, kernlab, bnlearn, igraph, fastcluster, caret and ROCR bedtools (2.16/2.17/2.25) Manual & different forms of EpiMINE can be downloaded is available under "Browse Files" section For any help, you can reach us at epimine.help@gmail.com -
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BiBler
Tool to manage and manipulate BibTeX entries
BiBler is a software for managing references to scientific articles using BibTeX. BiBler runs with a windows GUI or can be used as a Python library -
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dpanalyzer
postprocessing tool for Project Gutenberg Distributed Proofreaders
Specialized tool for PostProcessors of books produced by Project Gutenberg Distributed Proofreaders. Parses the markup structure of a project file out of the formatting rounds; reports about the text structure found, and identifies markup errors. Planned future features: generation of normalized dp output by rejoining split paragraphs and moving around footnotes, renumbering of pages; conversion to basic LaTeX and basic HTML markup for further processing. -
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MangaPark-DL
A Python script to download mangas from MangaPark
MangaPark-DL is a Python command-line script designed to download manga chapters from MangaPark and convert them into PDF files for convenient offline reading. The tool allows users to specify individual chapters or ranges, automating the retrieval of images and their conversion into a single document format. It is particularly useful for mobile users who prefer reading manga in PDF form rather than browsing online chapter pages. -
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Logicheck
An interactive tool to test logical structures and expressions
This program is intended to be useful for testing Boolean logic or propositional logic. It sets out logical expressions with symbols such as "AND" and "OR" in a graphical user interface. A truth table can then be generated for any such set of expressions. It can also be used to test the validity of deductive arguments - the program will advise whether an argument is valid and if not, list the counter examples to the argument. -
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Use Vim as IDE
use vim as IDE
Use Vim As IDE is a comprehensive configuration repository (by YangYangWithGnu) that guides you how to turn Vim into a full-fledged Integrated Development Environment (IDE). The project isn’t just a single plugin; it’s more like a curated set of plugins, configuration tips, and workflow suggestions to enable syntax highlighting, smart code completion, project navigation, semantic search, file-switching, build-integration, undo-history, templating and more—particularly geared toward C/C++... -
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CorNetMap
A tool for Gene Expression Correlation Network
Capabilities of CorNetMap: 1. Read data as tab-delimited text file. Can be used for analysis of any data set beyond gene expression. 2. Capable of both two-dimensional and multidimensional data analysis. 3. Calculate Pearson correlation and cross-correlation for analysis data with phase difference. 4. Generate correlation Heat-map and draws network map. 5. Save correlation data as text file. How to use and doccumentation:... -
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fastmail sender
A simple command line tool for sending email via SMTP
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EventGhost is an automation tool for MS Windows, that can be extended through plug-ins. Please visit http://www.eventghost.net/ to find more info and the latest release.
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ITD-Assembler
A tool to detect mid sized tandem duplications
This tool uses de novo assembly to detect Tandem Duplications in next gen assembly data. it takes as an input a bam file and outputs results in a custom format. It is linux based and has been developed primarily in haskell, and some parts in C and python. -
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colorview2d
Extendible 2D color plotting tool.
Visualize and analyze 3D data files using 2D colorplots. Inspired by spyview. Written in python. -
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ALL DEVELOPMENT MOVED TO GITHUB https://github.com/wxFormBuilder/wxFormBuilder wxFormBuilder - a RAD tool for wxWidgets GUI design.
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mergepbx
script for merging XCode project files in git
Tracking a Xcode project in a version control system is annoying. Simply adding files can lead to merge conflicts that have to be solved manually, although it would be possible to resolve the conflict automatically if the merge algorithm would be aware of the structure of Xcode's project file. After long and annoying merge sessions in one of my projects, I came to the conclusion, that writing a merge driver for git which understands the structure of the project file would be a worthwhile... -
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Condor GUI
GUI for managing and working with one or more HTCondor pools.
Condor GUI is a tool for managing and working with one or more HTCondor pools. It was developed at the Otto von Guericke University Magdeburg, Germany, to support the daily work using HTCondor. Version History: Version 0.9.3: - QDarkStyleSheet is an optional package now Version 0.9.2: - New layout of job file editor - Keyword arguments in job file editor - Linux compatibility -
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Leave A Trace Tools
Tools for reading the track data of the project "Leave a Trace"
...It is installed as a permanent exhibition within the Charité in Berlin, Germany. Please find more Details about LAT here: https://leave-a-trace.charite.de/action This sourceforge project provides python tools to read the raw XML data produced by LAT. The data reading module works with python2 and python3. LAT XML Data can be downloaded here: https://leave-a-trace.charite.de/action/xml_dateien_der_traces/ ## Visualization tool: This project also contains a GUI-based visualization tool, which allows creation of custom vector data (SVG) from the given LAT data. ... -
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Gas Flow Unit Conversion
Ideal gas mass flow unit conversion utility
Quickly and easily converts units of mass flow for Air, Argon, Nitrogen, and Oxygen. This tool is useful to those working in the industrial gas or related industries. Provides air, argon, nitrogen, and oxygen mass flow in the following units: 1) Normal cubic meters per hour/minute 2) Standard cubic feet per hour/minute 3) kg per hour/minute 4) lb per hour/minute 5) Tons per day 6) Metric Tons per day Requires Python 3 or greater -
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Etchimaths(A'LEVEL)
Etchimaths(A'LEVEL) is a typical Mathematics software for A'LEVEL
Etchimaths(A'LEVEL) is a Mathematics software, a helping tool for Mathematics simulation(solving) and study for the GCE ADVANCED LEVEL standard.It is a solving machine as well as a teaching machine -
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Toldiff is a diff tool that allows tolerable (insignificant) differences between two files to be suppressed showing only the important ones. The tolerable differences are recorded running the tool with an appropriate command line flag.
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The Daily Bible
A Bible Study Tool
Allows on computer browsing of the Bible. Uses Python3 and PyQt5. -
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PhaseSpace
Analyse dynamical systems, plot its phase space and critical points.
Phase Space is born out of the need of a simple yet powerful open source tool to study dynamical systems. PhaseSpace allows you to plot the phase space of the dynamical system you are studying, its critical points and the curves of slope zero and infinite.It can also plot the solutions of the system and it's vector field. To use PhaseSpace you'll need to have Python installed along with Matplotlib and Numpy. -
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forest01
Automatic delineation of forest borderlines
Forest01 is a tool for the automatic mapping of forest based on Airborne Laser Scanner data. The forest mapping is performed by means of quantitative criteria typical of forest definitions, namely minimum threshold for the height of trees, canopy cover, forest area size and width. -
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Cloud Export is a tool to automatically extract your data from web applications and save it to your local file system for backup purposes, but more extensive than Google Takeout. Plans are based on http://www.dataliberation.org.