Search Results for "mixture" - Page 4
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Showing 146 open source projects for "mixture"
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BNP-Homology
Alignment data for Protein Remote Homology Search
Alignment data from the application of a Bayesian mixture model to protein remote homology detection. -
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jLDADMM
A Java package for the LDA and DMM topic models
The Java package jLDADMM is released to provide alternative choices for topic modeling on normal or short texts. It provides implementations of the Latent Dirichlet Allocation topic model and the one-topic-per-document Dirichlet Multinomial Mixture model (i.e. mixture of unigrams), using collapsed Gibbs sampling. In addition, jLDADMM supplies a document clustering evaluation to compare topic models. See the usage of jLDADMM in its website at http://jldadmm.sourceforge.net/ -
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To explain how magic shortcut works. I have to first explain the problem it is solving. In a network environment where you are running a mixture of x64 and x86 clients. You have many shortcut problems and have to create many different shortcuts to get it to work. MagicShortcut removes the need for this.
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fitGCP
Fitting genome coverage distributions with mixture models
...fitGCP is a framework for fitting mixtures of probability distributions to genome coverage profiles. Besides commonly used distributions, fitGCP uses distributions tailored to account for common artifacts. The mixture models are iteratively fitted based on the Expectation-Maximization algorithm. Please find the accompanying paper here: http://dx.doi.org/10.1093/bioinformatics/btt147 -
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AMD_HealthSocialCareSim
Multi-paradigm simulation of health and social care for AMD sufferers
...This is an AnyLogic-based simulation of age-related macular degeneration (AMD), which tries to capture both the detailed operation of an eye clinic and the broader social care of AMD sufferers. It uses a mixture of agent-based modelling (ABM), discrete-event simulation (DES) and system dynamics (SD). It also serves as a demonstration simulation model for the Java Simulation Infrastructure Toolkit (JSIT), using its AnyLogic helper library, and an example of other software-engineering-best-practice ways to structure simulation models (which are covered in the journal paper "Simulation Design: Trans-Paradigm Best-Practice from Software Engineering" which introduces JSIT). ... -
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BiomeNet
BAYESIAN INFERENCE OF METABOLIC DIVERGENCE AMONG MICROBIAL COMMUNITIES
...To infer the structure of community-level metabolic interactions, BiomeNet applies a mixed-membership modelling framework to enzyme abundance information. The basic idea is that the mixture components of the model (metabolic reactions, subnetworks, and networks) are shared across all groups (microbiome samples), but the mixture proportions vary from group to group. Through this framework, the model can capture nested structures within the data. BiomeNet is unique in modeling each metagenome sample as a mixture of complex metabolic systems (metabosystems). -
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de:Code
Top-down dungeon crawler
de:Code is a 3rd-person top-down dungeon crawler. The world is procedurally generated using the file structure of the users hard drive. The game will use a mixture of different genres including steampunk, fantasy, mid-evil, and modern. The user will have to travel down 4 main paths each progressively harder than the last and each will have more than one genre conflicting inside. Each main path (connected by a central hub) will get harder as the user progresses down, finally reaching a unique boss at the end. -
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PopR
Analysis of population structure in R with finite and infinite mixture
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Programmed in Java, this game is a mixture between FreeCell and normal Solitaire. The current version is Beta v.76.
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Fast Matrix for Java
General purpose matrix utilities for Java in Parallel Computing
Fast Matrix for Java (fm4j) is a general-purpose matrix utility library for computing with dense matrices. fm4j encapsulated different underlying implementations and select the optimal one in run-time depending on the size of the input matrix. Moreover, fm4j employs Java (Tm) Concurrency to take advantage of the computation power of multi-cor processors. -
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MRHMMs
multivariate regression hidden Markov models
It includes a various hidden Markov models: regression, logistic regression, hidden Markov models, and emission probability density of a mixture of multivariate Normal distributions. Also available at https://github.com/yonoklee/MRHMMs Work in progress (Jun 20, 2021 - ) -
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MCTIMME
Microbial Counts Trajectories Infinite Mixture Model Engine
MCTIMME is a nonparametric Bayesian computational framework for analyzing microbial time-series data.The current implementation is in Matlab. -
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DNAcompact
Genome compression algorithm with/without reference (Linux/Windows)
As the technique of acquiring genome sequences advances, the storage and data transferring of large genome data are becoming important concerns for biomedical researchers. We propose a two pass genome compression algorithm, which highlights the synthesis of complementary contextual models and the introduction of logistic regression mixture method, to improve the compression performance. The proposed framework handles genome compression with and without reference seque- nces, and demonstrated performance advantage over the best existing algorithms. The proposed method without a reference led to bit rates of 1.720 and 1.838 bits per base for bacteria and yeast, which are approximately 3.7% and 2.6% better than the state-of-the-art algorithm. ... -
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GalGen Trader
A 2D Elite-style game written in Python 3.2.
...This functionality is supported by the game being written in Python 3, with its powerful support for including external code at run-time. The graphics will be a simple mixture of 2D raster and vector imagery with text-based menus, and the music will be highly reminiscent of the 80's 'chiptunes' that made up the soundtracks for games on the Amiga and Commodore 64. -
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Adaptative thresholding for fMRI
Matlab scripts to perform cluster FDR adaptative thresholding
Matlab plug-in for SPM allowing to obtain a threshold for cluster FDR - the method fits a Gamma-Gaussian mixture model to the SPM-T and finds the optimal threshold (crossing between noise and activation). Optionally write the thresholded maps. -
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KlustaKwik is an open-source C++ and Java program for automatic clustering of continuous data into a mixture of Gaussians. The program was originally developed for sorting of neuronal action potentials, but can be applied to any sort of data. NOTE (25/04/12): For those interested in trying the new masked version of KlustaKwik designed for large dense electrode array, download KlustaKwik3.0.1 in the maskedKlustaKwik folder. UPDATE (04/07/12): Bugs have been fixed in the new masked version of KlustaKwik. ...
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Mixture3D
A simple tool to create a 3D mixture
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MercuryBoard is a powerful message board system dedicated to raw speed with a mixture of features, ease of use, and ease of customization coupled with expandability, and diverse language services.
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Legible Assembler is my attempt to create an assembler that can turn Legible Assembly code into a linkable PE object file. Legible Assembly will use a mixture of AT&T and Intel styles, prepositions and carriage return line separators.
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This project hosts tools used for analysis of Gaussian Mixture Distributions (GMDs) which are used for statistical signal processing. The tools are libraries for implementing GMD operations and programs used to analyze properties of GMDs.
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XML Document Validator is a Java implementation of CLiXML - Constraint Language in XML - that allows to express complex constraints about XML content using a mixture of first order logic and XPath.
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ENIGMA is a free game and application development toolkit, utilizing GCC and a series of parsers to convert a high level, script-like language based on Game Maker's GML, into C++. The toolkit employs a mixture of both C++ and GML, accepting either.
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Flexible engine for Web based online multiplayer games. The games developed on top of it should be a mixture of real time and turn based strategy games nowhere found before.
