Search Results for "genetic algorithm java" - Page 2
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Showing 729 open source projects for "genetic algorithm java"
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pgapack, the parallel genetic algorithm library is a powerfull genetic algorithm library by D. Levine, Mathematics and Computer Science Division Argonne National Laboratory. The library is written in C. PGAPy wraps this library for use with Python.
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Evolutionary Computation Framework
C++ framework for application of any type of evolutionary computation.
ECF is a framework intended for application of any type of evolutionary computation (GA/GP, DE, Clonalg, ES, PSO, ABC, GAn, local search...). It offers simplicity for the end-user (parameterless usage, tutorial) and customization for experienced EC practicioners. -
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HashSum is a .NET port from GNU's md5sum and sha1sum. It supports: hash algorithm selection between MD5 and SHA1 (more could be added later) and compatibility between HashSum and GNU's checksum file format
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CalcTools
A library of tools for math calculation
Java source intended to serve as a nexus for teaching both mathematics and software solutions for computation on iterative equations. Public interfaces allow a user to extend the available operator and function lists to external libraries. Currently the packaged libraries include the CERN Colt library and the Anaconda package of math libraries which include MpMath and SciPy. A user can easily extend the functionality by coding to the provided interfaces and dropping a JAR -
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PWSLIB3
Password Safe encrypted databases, Java library
Java module to create, read and write Password Safe V3 encrypted databases. The package is a mature offspring from project JPasswords and can be used with Java 1.8. There is an API document available. -
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GOBU
Gene Browsing Utility
Gene Ontology Browsing Utility (hereinafter, GOBU, pronounced as "go-boo") is a browsing and manipulating tool for Post-Pipeline genetic data, especially useful for data with GO annotations. With help of GOBU, we expect biologists and their cooperating technicians can pay less effort on common programming stuff. At the same time, GOBU provides an Extendable Architecture which guarantees the possibility of 1. Arbitrary Data Description, 2. Data Integration, and 3. Extendable User Interface. -
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AngClust
AngClust: Angle-based feature clustering for time series
Citation: Aimin Li, Siqi Xiong, Junhuai Li, Saurav Mallik, Yajun Liu, Rong Fei, Hongfang Zhou, Guangming Liu. AngClust: Angle Feature-Based Clustering for Short Time Series Gene Expression Profiles. January 2022. IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM. DOI: 10.1109/TCBB.2022.3192306 Full text: https://ieeexplore.ieee.org/document/9833353/ https://pubmed.ncbi.nlm.nih.gov/35853049/ Highlights * We proposed a novel clustering algorithm based... -
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AES-256 CBC File Encrypter
Open source file encryption software
An open-source software that enables you to encrypt your files using the AES encryption algorithm. GitHub page can be found at https://github.com/Northstrix/AES-256_CBC_File_Encrypter Made with the help of Perplexity If you find this project convenient, please leave a review to help others learn about it. Similar projects: https://sourceforge.net/projects/sta-file-encrypter/ https://sourceforge.net/projects/aes256-cbc-file-encrypter/ -
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JVerifier An hash code verifier JVerifier is a command line application that verify checksums from a GNU-style file. Source code available on https://github.com/davidesestiliwork/JVerifier2 Usage: param 1: file name, param 2: algorithm, param 3: baseDir Example: java -jar JVerifier2.jar SHA1SUMS SHA-1 /home/davide Note: this program requires GnuPG to work properly.
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The program allows you to generate the hashes with the chosen algorithm (MD2, MD5, SHA-1, SHA-256, SHA-384 and SHA-512) of a single file or an entire folder (you can choose to scan the folder recursively or not recursively). It supports drag and drop of files and folders. The hash can be exported to text files. Compiled with openjdk 8. Usage: param 1: exclude symbolic links (0 or 1) [mandatory], param 2: exclude hidden files (0 or 1) [mandatory], param 3: folders to exclude [optional...
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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QScript
Expression and algorithm evaluator (built with Java)
...-UNITL). All the commonly used functions found in Java's Math class are implemented and can easily be extended with user defined functions. Although the download is packaged as a Processing library it does not require Processing, in fact QScript has no third party software dependencies only needing Java. -
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anotherjavlib
another java library for 3d rendering without hardware accel.
anotherjavlib is another java library built for software 3d rendering. (copyleft, fair use only, warranty void, care should be taken for mission critical systems.) although the library is built with minimum dependency using java system (some of which are arrays, big numbers, zip streams and many more), rendering pipe lines are seemingly coded butally right through. many of packages are tested along with the old dos os of eclipse set, and the included jar files seems running rite yet... -
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Jadecy
Java lib to compute (code) deps, SCCs, and cycles (Johnson algorithm).
Jadecy (Java Dependencies and Cycles) is a Java library to compute dependencies (elements depended on, or depending), strongly connected components, and cycles, in general directed graphs, or classes or packages dependencies graphs parsed from class files (major version <= 52, else does best effort). It uses Tarjan's algorithm for SCCs computation, and Johnson's algorithm for exhaustive cycles computation, with continuations instead of recursion, which allows to handle large graphs (< 2^31... -
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Tree Visualisation with Visual Cues
Tree Visualisation with Visual Cues
This project extends a previous work on node link tree visualisation and interaction by providing visual clues on hidden structures. We adopt DOITree from Prefuse package (https://github.com/prefuse/Prefuse), a multi-focal tree layout algorithm, for exploring large hierarchical structures. Related publications: https://www.sciencedirect.com/science/article/pii/S1045926X1630009X https://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=6902871 -
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BD-Func
Bidirectional Functional Enrichment of Gene Expression Data
BD-Func is an algorithm to predict activation or inhibition of pathways based upon gene expression patterns. If you use BD-Func, please cite: Warden C, Kanaya N, Chen S, and Yuan Y-C. (2013) BD-Func: A Streamlined Algorithm for Predicting Activation and Inhibition of Pathways. peerJ, 1:e159 -
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Sudoku Maker is a generator for Sudoku number puzzles. It uses a genetic algorithm internally, so it can serve as an introduction to genetic algorithms. The generated Sudokus are usually very hard to solve -- good for getting rid of a Sudoku addiction.
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AcoPath for Java
Ant Colony Optimization algorithm for the shortest path problem.
The shortest path problem is solved by many methods. Heuristics offer lower complexity in expense of accuracy. There are many use cases where the lower accuracy is acceptable in return of lower consumption of computing resources. The basic idea of the Ant System is that virtual ants are exploited for finding paths with a specific property, e.g., short distance between physical nodes, in the same way nature guides physical ants. -
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sRNAWorkbench
The UEA sRNA Workbench
A suite of tools for analysing small RNA (sRNA) data from Next Generation Sequencing devices. Including expression profiling of known mirco RNA (miRNA), identification of novel miRNA in deep-sequencing data and identification of other interesting landmarks within high-throughput genetic data -
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JQM Java Quine McCluskey
JQM - Java Quine McCluskey for minimization of Boolean functions.
Java Quine McCluskey implements the Quine McCluskey algorithm with Petrick’s Method (or the method of prime implicants) for minimization of Boolean functions. This software can be used both for learning and solving real problems. As a learning/teaching tool, it presents not only the results but also how the problem was solved as well as how to use Karnaugh Maps to solve the problem. Up to sixteen functions of sixteen variables can be minimized. A graphical interface is provided for entering... -
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MolMarker
Java software to evaluate the results obtained by molecular markers
Journal article to cite: Jahnke, G.; Smidla, J.; Poczai, P. MolMarker: A Simple Tool for DNA Fingerprinting Studies and Polymorphic Information Content Calculation. Diversity 2022, 14, 497. https://doi.org/10.3390/d14060497 Leave a review, please! Your opinion matters! :-) MolMarker is user-friendly software to help evaluate the research results obtained by molecular markers. The software can handle genetic (e.g. SSR) and biochemical (e.g. isozyme) data, can construct similarity matrices... -
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TengineKit
TengineKit - Free, Fast, Easy, Real-Time Face Detection
Free, Fast, Easy, Real-Time Face Detection & Face Landmarks & Face Attributes & Hand Detection & Hand Landmarks & Body Detection & Body Landmarks & Iris Landmarks & Yolov5 SDK On Mobile. TengineKit is an easy-to-integrate AI algorithm SDK. At present, it can run on various mobile phones at very low latency. We will continue to update this project for better results and better performance! -
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genome-wb3-asm
A Genetic Algorithm Library written in Amiga Workbench 3.x assembler
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NtrUtil
A command line interface for encryption and decryption using the NTRU
A command line interface for encryption and decryption using the NTRU cryptography algorithm. "NTRU is a public key cryptosystem that is considered unbreakable even with quantum computers. Commonly used cryptosystems like RSA or ECC, on the other hand, will be broken if and when quantum computers become available."-NTRU -
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JQuickBase
elementary database files for Java, B+ tree index files, ISAM
Java API to realize quick ISAM (Index Sequential Access Method) functionality for application in the file system. Includes scalable database files w/ space recovery and variable record length, scalable B+Tree index files. Supports file backup and restore. Two package types: one with and one without strong file encryption using Twofish algorithm and state-of-the-art encryption technology.
