Search Results for "bed" - Page 2
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Showing 78 open source projects for "bed"
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Ship Agents FasterGemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
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Enterprise-grade ITSM, for every businessFreshservice is an intuitive, AI-powered platform that helps IT, operations, and business teams deliver exceptional service without the usual complexity. Automate repetitive tasks, resolve issues faster, and provide seamless support across the organization. From managing incidents and assets to driving smarter decisions, Freshservice makes it easy to stay efficient and scale with confidence.
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HIGH-THROUGHPUT TABULAR DATA PROCESSOR (HTDP) is Java application that is intended to facilitate data exploration and reduction tasks in large text files resulting from high throughput technologies, e.g. massively parallel sequencing or microarrays. The software has been optimized for microarray and deep parallel sequencing data, however it can accept any character delimited tabular data sets. HTDP can also import, process and convert Variant Call Format (VCF) files ver. 4.0, 4.1 and 4.2...
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Remote Player
Music player with remote control app
Remote-Player is an open source music player, which allows you to listen to music and control the playback while laying on your bed. It has a remote control - (Remote Player Android App). Connection between the computer and and the android app is via wi-fi. App's functions: display title of current playing song; play/stop; play, next, previous song; change volume; change playing offset; If you have any ideas what can I do to make the app better, please share with me and I'll make that happen -
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RTToolbox
Library to support quantitative analysis of radiotherapy data
...Tools such as DVH calculation, arithmetic operations on dose distributions and structure relationship analysis are provided as a basis for further calculations. Dose comparison indices such as Conformity Index (CI), Homogeneity Index (HI) and Conformation Number (CN), and biological models including TCP, NTCP, EUD and BED are determined from dose distributions and DVHs. The RTToolbox can be easily extended to support other data format, comparison indices and -
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P3BSseq
Parallel processing pipeline for analysis of bisulfite sequencing data
...We have developed P3BSseq, a parallel processing pipeline for fast, accurate and automatic analysis of BSseq reads that trims, aligns, annotates, records the intermediate results, performs bisulfite conversion quality assessment, generates BED methylome and report files following the NIH standards. P3BSseq outperforms the known BSseq mappers regarding running time, computer hardware requirements. We optimized the P3BSseq parameters for both directional and non-directional libraries, and for both single-end and paired-end reads of Whole Genome and Reduced Representation BSseq. ... -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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DaMold
a data mining platform for variant annotation and visualization.
DaMold a powerful, integrated, web-based, and user-friendly tool to filter, annotate, cross-link, and visualize NGS, Sanger, and hotspot variants. It is easy-to-use software, which provides flexible input options and accepts variants in VCF and BED formats. For each variant DaMold predicts the variant effect, such as codon change, and amino acid change. Furthermore, it cross-links each variant with more than 30 clinically relevant public databases, which contain already reported SNPs and INDELs from previous experimental studies along with associated genomic, proteomic, and clinical information. ... -
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TinyCog
Cognitive architecture with a focus on self-models
TinyCog is a cognitive architecture (perception, action, reasoning, planning, and language) with a focus on representing "self-models" (physical, capabilities, intentions, social, historical, "cognitive stream") in order to implement social reasoning and collaborative planning in a "hunter domain" test bed. We use Prolog, RDF Triples, Description Logic and a HTN-Planner as base technologies. -
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OWASP Security Shepherd
Web and mobile application security awareness/training platform
The OWASP Security Shepherd project enables users to learn or to improve upon existing manual penetration testing skills. Utilizing the OWASP top ten as a challenge test bed, common security vulnerabilities can be explored and their impact on a system understood. The by-product of this challenge game is the acquired skill to harden a player's own environment from OWASP top ten security risks. The modules have been crafted to provide not only a challenge for a security novice, but security professionals as well. ... -
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jChIP
Graphical environment for exploratory ChIPSeq data analysis
...In addition it computes statistics of the number of loci/positions containing specified amount of tags. jChIP is able to load data in several common formats (SAM, BAM, WIG, BED, Bowtie) and download loci definitions directly from the Ensembl database. http://www.biomedcentral.com/1756-0500/7/676 -
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Auto Primer3
Automatically design primers to genes/coordinates using primer3.
PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/autoprimer3) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/autoprimer3/releases/latest). AutoPrimer3 retrieves gene information, DNA sequences and SNP information from the UCSC genome browser and uses primer3 to automatically design primers to genes or genomic coordinate targets. Primers may be designed using information from any of the UCSC hosted genomes... -
Forever Free Full-Stack Observability | Grafana CloudBuilt on open standards like Prometheus and OpenTelemetry, Grafana Cloud includes Kubernetes Monitoring, Application Observability, Incident Response, plus the AI-powered Grafana Assistant. Get started with our generous free tier today.
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WigMaker
make wiggle file from bed file for ChIP-seq samples
This application takes bed file(or gzip bed, with .gz extension) as input, it creats a single file or a fold like 'wigs for xxx' in which the chromosome separated wiggle files will be saved. Users can set the wigextend value and step value for the output wig files. By default, they are 200 and 25. The application requires a lot of memory (about 2GB) -
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ImageTerrier is an open-source, scalable, high-performance search engine platform for content-based image retrieval applications. The platform provides a comprehensive test-bed for experimenting with image retrieval techniques.
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Zalarm
Alarm Clock with a couple of nice extra features. Wake up your way.
...Or maybe you are the kind that prefers the more soft and sensitive alarms. With Zalarm this is all up to you. The reason for adding notes to the alarm is simple. Maybe by the time you go to bed you have a brilliant idea, or there is something you have to remember by the time you wake up. This feature let you get reminded of this. When the alarm goes off, you will in addition to the alarm get a pop-up message. The message contains your predefined notes. This however is completely optional. Enjoy! -
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ReShare Framework
Reshare: A framework for research modeling, combining and sharing
...Maximizing utilization while preserving the semantics is one of the main challenges when the heterogeneous knowledge is combined. Therefore, operational annotations were designed to allow generic object modeling, binding and representation. Furthermore, a test bed is developed and preliminary results are presented to show the usefulness and robustness of our approach. -
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It is a framework for testing various revisitation algorithms on real datasets. Some algorithms have already been implemented and are available for testing. Additional algorithms can be added by users and evaluated on this test bed.
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CADET
Chromatography Analysis and Design Toolkit
We have moved to GitHub: https://github.com/cadet The Chromatography Analysis and Design Toolkit (CADET) is developed at the Institute of Bio- and Geosciences 1 (IBG-1) under supervision of Prof. Eric von Lieres. The core of the CADET software is a fast and accurate solver for the General Rate Model (GRM) of packed bed liquid chromatography. The CADET solver covers a wide range of GRM variants, combining different transport and binding models with state-of-the-art mathematical algorithms and scientific computing techniques. The CADET framework also comprises a MATLAB interface and standard routines for parameter estimation, process optimization and experimental design. ... -
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GenomeRunner
Annotation and enrichment of Next-Gen sequencing data
...It performs annotation and enrichment analyses of user-provided genomic regions (SNPs, ChIP-seq binding sites etc.) against >6,000 (human genome) epigenomic features available from the UCSC genome browser. Input - any genome-wide data data in .bed format (tab-delimited text file with chrom, chromStart, chromEnd). Annotation analysis output - detailed annotation of each genomic region in input data. Used to prioritize individual genomic regions by the total number of epigenomic features they co-localize with. Enrichment analysis output - p-values of statistically significant co-localizations of input genome-wide data with genome annotation features selected for the analysis. ... -
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CKSauthorer
Work in progress K99/R00 project at Mayo and Northwestern
...This project investigates the feasibility of using a novel text mining based informatics approach to semi-automate the management of a clinical knowledge system, using UpToDate as the test bed. Although the methods will be applicable to any clinical knowledge system and any topic, they will be evaluated using two important test topics from cardiology – congestive heart failure and atrial fibrillation. While the existing content of UpToDate is private, the methods and the code we develop to assist in generating the content are being released incrementally. ... -
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Locanda
Booking management system for hotels, bed&breakfasts, guesthouses
Locanda is an innovative booking management system designed for any touristical structure such as hotels, bed and breakfasts, guesthouses, farmhouses. Featuring a user-friendly and dynamic web interface, Locanda allows a seamless management of all the resources an owner has to control: Bookings, Rooms, Room Types, Guests, Extras, Price Lists, Seasons, Conventions. It is a system developed by the Open Source Lab c/o Sardegna Ricerche, Sardinia, Italy. -
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GenOO-HTS
A Modern Perl Framework for High Throughput Sequencing analysis
GenOO-HTS [jee-noo] is an open-source; object-oriented Perl framework specifically developed for the design of High Throughput Sequencing (HTS) analysis tools. The primary aim of GenOO-HTS is to make simple HTS analyses easy and complicated analyses possible. GenOO-HTS models biological entities into Perl objects and provides relevant attributes and methods that allow for the manipulation of high throughput sequencing data. Using GenOO-HTS as a core development module reduces the overhead... -
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monoDevPrjs
Idea bank for projects using MonoDevelop
Not much more to say. This is just a test bed for MonoDevelop projects which might later take on a life of their own. The first project here is to make a productivity / project administration program, which I am calling RBMhelper. When it becomes alpha stage, I'll move it over to my other project repository with that name. "miniTimer" is a basic count up /down timer. -
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virtualStapler
Large Script Workaround
.... --------------------------- Yes No --------------------------- which is the Computer's way of saying it's not fair it should be working at 2 a.m. if you went to bed already... so it waits for you to return. which means next morning you spend the next 6 hours clicking 'n' every 3 minutes. my little program sends an 'n' to the keyboard every 5 seconds so you don't have to. it's a bit more elegant than a stapler or a coffe mug or something, and is less likely to come off by accident, or spill stuff over your keyboard when your cat sees it . -
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iPiG
Integrating PSMs into Genome browser visualisations
iPiG targets the integration of peptide spectrum matches (PSMs) from mass spectrometry (MS) peptide identifications into genomic visualisations provided by genome browser such as the UCSC genome browser (http://genome.ucsc.edu/). iPiG takes PSMs from the MS standard format mzIdentML (*.mzid) or in text format and provides results in genome track formats (BED and GFF3 files), which can be easily imported into genome browsers. For more details about iPiG and it's functionallity, please see "iPiG: Integrating Peptide Spectrum Matches Into Genome Browser Visualizations" Mathias Kuhring and Bernhard Y. Renard (http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0050246) -
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DAiict Mesh Network (DAMN)
DAMN is an attempt to create a mesh network in DAIICT campus.
DAMN, as a mesh network will allow free communication inside the campus at DAIICT. Telephony, file sharing and other LAN applications can now be used on the go with the mesh network acting as a Wireless LAN. DAMN will also act as a test bed for future research in DAIICT. -
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A test bed for experiments on achieving and enhancing technical interoperability between and with help of Open Source middleware components. Developed under QualiPSo (http://www.qualipso.org), WP3.1