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Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST.
Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted.
Formats which can be generated by...
A command line toolki to solve a problem your favorite program defines
Diagonal can be used for:
- getting descriptive statistics such as mean/median/mode with your program producing a sample
- finding a root of an equation your program defines
- calculating a fixed point of a function your program defines
- detecting a cycle of a fuction your program defines
as well as
- decoding a VCDIFF file