Search Results for "raw"

...Commit records are stored in a configurable local data file, with a JavaScript configuration file controlling themes and default behavior. A post-commit hook can record future work automatically, while companion importers can add existing repository history. Raw JSON output allows other tools to create HTML pages, images, or custom visualizations.

Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated by fcGENE: plink-pedigree, plink-raw, plink-dosage, mach-inputs, minimac-inputs, impute-inputs, beagle-inputs and bimbam-inputs, HAPLOVIEW-inputs, EIGENSOFT-inputs. ...

FastPval is multiple stage p-value computing software that computes empirical p-values from a large set of permutated/resampled background data.