Showing 19 open source projects for "high"

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    FieldTrip

    FieldTrip

    The MATLAB toolbox for MEG, EEG and iEEG analysis

    ...It supports the data formats of all major MEG systems (CTF, Neuromag/Elekta/Megin, BTi/4D, Yokogawa/Ricoh, FieldLine) and of most popular EEG systems, and new formats can be added easily. FieldTrip contains high-level functions that you can use to construct your own analysis protocols in MATLAB. Furthermore, it easily allows methods researchers to incorporate new methods for EEG/MEG analysis.
    Downloads: 5 This Week
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  • 2

    Practically Random

    statistical tests & psuedo- random number generators (RNGs, PRNGs)

    Randon number generation & testing. The best suite of statistical tests for fast PRNGs anywhere. Multithreaded for speed, command line tools for automation, no upper limit on data size. Also, a variety of C++ pseudo-random number generators with well designed interfaces aimed at practical uses, not just research.
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    Downloads: 63 This Week
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  • 3
    LabPlot

    LabPlot

    Data Visualization and Analysis

    LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone.
    Downloads: 12 This Week
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  • 4
    OpenSIMPLY

    OpenSIMPLY

    Discrete-event simulation modeling software for science and education

    ...Download OpenSIMPLY at opensimply.org The project is free computer simulation software based on discrete-event approach. OpenSIMPLY is a science software with very high simulation performance. So, the simulation results can be obtained much faster. The project is suitable for people with any modeling experience, and can be used for both science and education. Some application of this modeling software are: - traffic simulation - network simulation, - emergency and evacuation ways simulation and much more. ...
    Downloads: 0 This Week
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  • 5
    Uranie

    Uranie

    Uranie is CEA's uncertainty analysis platform, based on ROOT

    ...It provides various tools for: - data analysis - sampling - statistical modeling - optimisation - sensitivity analysis - uncertainty analysis - running code on high performance computers - etc. Thanks to ROOT, it is easily scriptable in CINT (c++ like syntax) and Python. Is is available both for Unix and Windows platforms (a dedicated platform archive is available on request). Note : if you have downloaded version 3.12 before the 8th of february, a patch exists for a minor bug on TOutputFileKey file, don't hesitate to ask us.
    Downloads: 2 This Week
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  • 6
    seaborn

    seaborn

    Statistical data visualization in Python

    Seaborn is a Python data visualization library based on matplotlib. It provides a high-level interface for drawing attractive and informative statistical graphics. Seaborn helps you explore and understand your data. Its plotting functions operate on dataframes and arrays containing whole datasets and internally perform the necessary semantic mapping and statistical aggregation to produce informative plots. Its dataset-oriented, declarative API lets you focus on what the different elements of your plots mean, rather than on the details of how to draw them. ...
    Downloads: 8 This Week
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  • 7

    MAGeCK

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

    MAGeCK2 is here: https://github.com/davidliwei/mageck2 Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at...
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    Downloads: 84 This Week
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  • 8
    SAS codes for LMG variable importance, Box-Cox transformation including interactions. Documentation and PowerPoint slides. Directories under "Files" with descriptions: NESUG 2014: "A Fast, High-Precision Implementation of the Univariate One-Parameter Box-Cox Transformation Using the Golden Section Search in SAS/IML®" SESUG 2017: "Decomposing the R-squared of a Regression Using the Shapley value in SAS®" SESUG 2019: "Conditionally Executing Data Steps and Statements Based on the Presence of Variables in a SAS® Dataset" GASP 2020: "Online Winsorization of the Survey of Construction’s Price Estimates" My SESUG 2015 materials can also be found in my project "constrainingarrays" at https://sourceforge.net/projects/constrainingarrays/.
    Downloads: 0 This Week
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  • 9
    gsasnp2

    gsasnp2

    PubMed ID: 29562348 / DOI: 10.1093/nar/gky175

    * GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data...
    Downloads: 1 This Week
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  • 10

    LightPCC

    Parallel pairwise correlation computation on Intel Xeon Phi clusters

    The first parallel and distributed library for pairwise correlation/dependence computation on Intel Xeon Phi clusters. This library is written in C++ template classes and achieves high speed by exploring the SIMD-instruction-level and thread-level parallelism within Xeon Phis as well as accelerator-level parallelism among multiple Xeon Phis. To facilitate balanced workload distribution, we have proposed a general framework for symmetric all-pairs computation by building provable bijective functions between job identifier and coordinate space for the first time.
    Downloads: 0 This Week
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  • 11

    runjags

    The 'runjags' R package and standalone JAGS extension module

    This package provides high-level interface utilities for MCMC models via Just Another Gibbs Sampler (JAGS), facilitating the use of parallel (or distributed) processors for multiple chains, automated control of convergence and sample length diagnostics, and evaluation of the performance of a model using drop-k validation or against simulated data. Template model specifications can be generated using a standard lme4-style formula interface to assist users less familiar with the BUGS syntax. ...
    Downloads: 2 This Week
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  • 12

    Chordalysis

    Log-linear analysis (data modelling) for high-dimensional data

    ===== Project moved to https://github.com/fpetitjean/Chordalysis ===== Log-linear analysis is the statistical method used to capture multi-way relationships between variables. However, due to its exponential nature, previous approaches did not allow scale-up to more than a dozen variables. We present here Chordalysis, a log-linear analysis method for big data. Chordalysis exploits recent discoveries in graph theory by representing complex models as compositions of triangular structures,...
    Downloads: 0 This Week
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  • 13
    ...The function syntax is similar to that found in MatLab and the library is designed to make it easy to port your code from MatLab to C++. The idea is to provide Scientists, Engineers, Researchers and other non full-time programmers an easy to use, high performance library of functions.
    Downloads: 0 This Week
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  • 14

    slycat

    Web-based data science analysis and visualization platform.

    This is Slycat - a web-based data science analysis and visualization platform, created at Sandia National Laboratories. The goal of the Slycat project is to develop processes, tools and techniques to support data science, particularly analysis of large, high-dimensional data.
    Downloads: 0 This Week
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  • 15
    IterInt is a numerical integration package that implements iterated numerical integration methods. Iterated methods can be used to compute low dimensional (less than ten, for example) integration problems to get very accurate results.
    Downloads: 0 This Week
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  • 16

    Black Hole Cortex

    Sphere surface layers of visual cortex approach maximum info density

    ...What we think our eyes see, the imagination, is the densest and smallest layer. SphereSurfaces outside it recursively have more neurons, more surface area, but less density since it has to eventually dimension-reduce to high level ideas, like there are 10000 Wikipedia page names that cover most parts of the world. We can think of Wikipedia as a layer above our brains, a global SphereSurface of large surface area (a cortex layered on billions of minds) and small (10000 most important pages) density.
    Downloads: 0 This Week
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  • 17
    mlpy

    mlpy

    Machine Learning Python

    mlpy is a Python module for Machine Learning built on top of NumPy/SciPy and of GSL. mlpy provides high-level functions and classes allowing, with few lines of code, the design of rich workflows for classification, regression, clustering and feature selection. mlpy is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License version 3. mlpy is available both for Python >=2.6 and Python 3.X.
    Downloads: 2 This Week
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  • 18
    Graphx

    Graphx

    GraphxV1.1

    Graphx - simple plotter for students and pupils of high school. The project source on github.com: https://github.com/Armenian/graphx
    Downloads: 0 This Week
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  • 19
    A population-based method for DNA copy number analysis: recurrent copy number aberration indentification in multiple samples (with no need of single-sample calling). Developed for a quick analysis of high resolution and large population data.
    Downloads: 0 This Week
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