Showing 204 open source projects for "java open source"

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  • 1

    abc-sde

    approximate Bayesian computation for stochastic differential equations

    A MATLAB toolbox for approximate Bayesian computation (ABC) in stochastic differential equation models. It performs approximate Bayesian computation for stochastic models having latent dynamics defined by stochastic differential equations (SDEs) and not limited to the "state-space" modelling framework. Both one- and multi-dimensional SDE systems are supported and partially observed systems are easily accommodated. Variance components for the "measurement error" affecting the...
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  • 2
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  • 3

    QTASEP

    Visualization application for various TASEP, ASEP and SSEP models.

    Visualization of TASEP, ASEP, SSEP models with various update rules based on Zarja simulation library using QT GUI library.
    Downloads: 0 This Week
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  • 4
    genomemap
    A software framework to build maps for Neurospora crassa genome based on probabilistic models of meiotic recombination. A netbeans platform application is built to incorporate the computations. Project issues are mainatined at https://freecode4susant.atlassian.net/browse/GENOMEMAP
    Downloads: 0 This Week
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    libfgen

    Library for optimization using a genetic algorithm or particle swarms

    libfgen is a library that implements an efficient and customizable genetic algorithm (GA). It also provides particle swarm optimization (PSO) functionality and an interface for real-valued function minimization or model fitting. It is written in C, but can also be compiled with a C++ compiler. Both Linux and Windows are supported.
    Downloads: 2 This Week
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  • 6
    Command line fibonacci series calculation program.
    Downloads: 0 This Week
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  • 7
    R packages supporting parallel computing.
    Downloads: 0 This Week
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  • 8

    Weibull-based reliability toolkit for R

    R package for Weibull analysis on (life-)time observations.

    This is a small R package for doing Weibull-based reliability analysis. This R package is now obsolete and has been superseded by 'project Abernethy' on http://r-forge.r-project.org/projects/abernethy/.
    Downloads: 0 This Week
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  • 9

    Math Simulator

    A simulation software for numerical techniques.

    Math Simulator is a java-based application which simulates various mathematical techniques.It is extremely useful for the Engineering students and for professionals. Most importantly, unlike most others Math Simulator is an Application rather than a java - library. So, user is not required to have any computer background. A Unique feature of Math Simulator is that it allows you to save queries for later reference. Hence you can save the problems along with their results.
    Downloads: 0 This Week
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  • 10
    Robust Correlation Toolbox

    Robust Correlation Toolbox

    Free Matlab toolbox to compute robust correlations

    The Robust Correlation Toolbox is a free collection of Matlab functions allowing to visualize data in univariate and bivariate space, check assumptions of normality and homoscedasticity and compute Pearson's and Spearman's, percentage bend, and skipped correlations with bootstrapped confidence intervals - see http://www.frontiersin.org/Quantitative_Psychology_and_Measurement/10.3389/fpsyg.2012.00606/full -- code moved to https://github.com/CPernet/robustcorrtool
    Downloads: 4 This Week
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  • 11
    Tools to analyse and use passport data for biological collections.
    Downloads: 0 This Week
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  • 12

    MCPerm: Monte Carlo SNP permutation

    Monte Carlo permutation method for SNP multiple test correlation

    MCPerm: A Monte Carlo permutation method for multiple test correlation in case-control association study Traditional permutation (TradPerm) test is an important non-parametric analysis method which can be treated as the gold standard for multiple testing corrections in case-control association study. However, it relies on the original single nucleotide polymorphism (SNP) genotypes and phenotypes data to perform a large number of random shuffles, and thus it is computationally intensive,...
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  • 13
    C++ Airline Travel Market Simulator
    That project aims at studying and comparing typical airline IT methods, for instance RM-related algorithms. It works from a Unix/Linux/Mac command-line, and exposes basic APIs. It is being developed in C++, with Python wrappers for some components.
    Downloads: 0 This Week
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  • 14
    This is a Matlab software package for single molecule FRET data analysis.
    Downloads: 1 This Week
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  • 15
    RVASSOC is a simple program for performing various tests for association between genotypes and disease status using sequence variants from unrelated cases and controls. It was designed to accommodate both rare variants and missing genotypes.
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  • 16

    Black Hole Cortex

    Sphere surface layers of visual cortex approach maximum info density

    Near the surface (even horizon) of a black hole, there is maximum information density in units of squared plancks (and some translation to qubits). Similarly, our imagination is the set of all possible things we can draw onto our most dense layer of visual cortex in electricity patterns. Bigger layers have more neurons to handle those possibilities. A Black Hole Cortex is a kind of visual cortex that has density of neuron layers similar to density at various radius from a black hole. What we...
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  • 17
    Statistical models with python using numpy and scipy. Currently covers linear regression (with ordinary, generalized and weighted least squares), robust linear regression, and generalized linear model, discrete models, time series analysis and other statistical methods.
    Downloads: 2 This Week
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  • 18

    CvHMM

    Discrete Hidden Markov Models based on OpenCV

    This project (CvHMM) is an implementation of discrete Hidden Markov Models (HMM) based on OpenCV. It is simple to understand and simple to use. The Zip file contains one header for the implementation and one main.cpp file for a demonstration of how it works. Hope it becomes useful for your projects.
    Downloads: 0 This Week
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  • 19

    HMMLab

    A Hidden Markov Model editor with support to HTK

    HMMLab is a Hidden Markov Model editor oriented on HMMs for speach recognition. It can create, edit, train and visualize HMMs. HMMLab supports loading/saving HMMs from/to HTK files.
    Downloads: 0 This Week
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  • 20
    ShiVaSmiles

    ShiVaSmiles

    A slick interface to see various scale analysis algorithms in action.

    The Shape Visualizer is intented to be an exploratory/educational tool making it quick and easy to see how various mathematical methods perform in analysing and selecting the various patterns present on an image. The main website is built as a wiki gathering info and examples on the various implemented algorithms. The combination of the application and its wiki intend to constitute a nice little pedagogic toolkit for multiscale analysis. Feel free to contribute code or wiki content !
    Downloads: 0 This Week
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  • 21
    The Automated Parameter Estimation and Model Selection Toolkit is a fast, parallelized MCMC engine written in C for Bayesian inference (parameter estimation and model selection).
    Downloads: 0 This Week
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  • 22
    Scale Assistant is an OpenOffice.org extension designed to give OOo Calc additional power that meet some needs of social sciences researcher.
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  • 23
    Nen

    Nen

    neural network implementation in java

    3-layer neural network for regression and classification with sigmoid activation function and command line interface similar to LibSVM. Quick Start: "java -jar nen.jar"
    Downloads: 0 This Week
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  • 24
    A statistics extension for Open Office with a feel of SPSS. Primarily meant for students of social sciences as well as other in a need of easy-to-use statistics software.
    Downloads: 0 This Week
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  • 25
    mlpy

    mlpy

    Machine Learning Python

    mlpy is a Python module for Machine Learning built on top of NumPy/SciPy and of GSL. mlpy provides high-level functions and classes allowing, with few lines of code, the design of rich workflows for classification, regression, clustering and feature selection. mlpy is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License version 3. mlpy is available both for Python >=2.6 and Python 3.X.
    Downloads: 2 This Week
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