Showing 177 open source projects for "sector"

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  • 1
    TOPS_CeMM

    TOPS_CeMM

    User Friendly Data Analysis Tool for Interaction Data

    TOPS provides the benchtop scientist with a free toolset to analyze, filter and visualize data from functional genomic gene-gene and gene-drug interaction screens with a flexible interface to accommodate various different technologies and analysis algorithms in addition to those already provided here.
    Downloads: 0 This Week
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  • 2
    fesslix

    fesslix

    Stochastic Analysis

    A brief summary of the main features of Fesslix: - Perform non-intrusive reliability analysis or Bayesian updating either --- by running commands on the command line or --- by means of an Octave interface or --- by means of a Python interface - Flexible input language for writing Fesslix parameter files --- Control flow statements (e.g. if, for, while) --- Most parameters can be defined as functions - Working with response surfaces - Linear finite element analysis using truss, beam...
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  • 3
    IterInt is a numerical integration package that implements iterated numerical integration methods. Iterated methods can be used to compute low dimensional (less than ten, for example) integration problems to get very accurate results.
    Downloads: 0 This Week
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  • 4

    GENIE (GEne-geNe IntEraction)

    GPU based Parallel Gene-Gene Interaction Analysis

    Gene-gene interaction in genetic association studies is computationally intensive when a large number of SNPs are involved. Most of the latest Central Processing Units (CPUs) have multiple cores, whereas Graphics Processing Units (GPUs) also have hundreds of cores and have been recently used to implement faster scientific software. However, currently there are no genetic analysis software packages that allow users to fully utilize the computing power of these multi-core devices for genetic...
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  • 5

    LQFB-analyser

    A lqfb delegation analyser. A 3d directed weighted multi graph.

    A rich client to analyse data from a liquid-feedback (http://liquidfeedback.org/) instance, for now it's a 3d graph explorer to inspect the delegations. It's an application based on the eclipse platform (indigo). To be precise its a directed weighted multi graph browser in 3d. Find out more in the wiki https://sourceforge.net/p/lqfbanalyser/wiki/Home/ . Generated reports https://sourceforge.net/p/lqfbanalyser/wiki/generated%20lqfb%20reports/ .
    Downloads: 0 This Week
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  • 6

    FreDec

    Parallelized FREquency DEComposer algorithm

    This is a parallelized algorithm performing a decomposition of the time-series data into a number of sinusoidal components, disentangling them from the white Gaussian noise. The algorithm analyses all suspicious frequencies, including the ones that look like an alias at a glance, but may become preferable later. After selection of the initial frequency candidates, the algorithm passes through all their possible combinations and estimates their multi-frequency statistical significance. In the...
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  • 7
    Statistics modules in Perl Data Language, with a quick-start guide for non-PDL people. They make the PDL shell work like R, but with PDL threading (fast automatic iteration) of procedures including t-test, linear regression, and k-means clustering.
    Downloads: 0 This Week
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  • 8
    Please participate in the SURVEY on rgedit's future: https://www.surveymonkey.com/s/VNMMJMJ your answers are much appreciated! Gedit (Gnome editor, www.gedit.org) plug-in allowing it to become an easy-to-use and yet light-weight IDE for the statistical programming environment, R (www.r-project.org).
    Downloads: 0 This Week
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  • 9

    StochDecomp

    User Manual describing theory behind the package, installation instruc

    Stochasticity is an indispensable aspect of biochemical processes at the cellular level. Studies on how the noise enters and propagates in biochemical systems provided us with nontrivial insights into the origins of stochasticity, in total however they constitute a patchwork of different theoretical analyses. Here we present a flexible and generally applicable noise decomposition tool, that allows us to calculate contributions of individual reactions to the total variability of a system’s...
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  • 10
    DeDAY

    DeDAY

    MLE survival analysis: Gompertz, Weibull, Logistic and mixed morality.

    DeDAY (Demography Data Analyses) is a tool of analyzing demography data. It supports Gompertz, Weibull and Logistic distributions. DeDay also supports mixed mortality models based on these distribution such as the Gompertz-Makeham distribution. Distributions such as Gompertz describes only age-dependent mortality, which increases over time. Mixed mortality models, such as in Gompertz-Makeham distribution, consider a more general case where mortality is consist of both age-dependent and...
    Downloads: 0 This Week
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  • 11

    statspy

    Python module for statistics built on top of NumPy/SciPy

    Downloads: 0 This Week
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  • 12
    Myrtle

    Myrtle

    A simple programmable spreadsheet for learning statistics.

    Myrtle is a simple programmable spreadsheet and statistical analysis software specifically designed for learning statistics. It provides the standard spreadsheet functionality one would expect like multiple tabbed sheets, relative and absolute row and column referencing in formulas, and a large catalog of built-in functions. Functions specific to logic and computer science, mathematics, probability, and statistics are available. Student's can easily create, customize, and update plots and...
    Downloads: 0 This Week
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  • 13

    abc-sde

    approximate Bayesian computation for stochastic differential equations

    A MATLAB toolbox for approximate Bayesian computation (ABC) in stochastic differential equation models. It performs approximate Bayesian computation for stochastic models having latent dynamics defined by stochastic differential equations (SDEs) and not limited to the "state-space" modelling framework. Both one- and multi-dimensional SDE systems are supported and partially observed systems are easily accommodated. Variance components for the "measurement error" affecting the...
    Downloads: 0 This Week
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  • 14

    QTASEP

    Visualization application for various TASEP, ASEP and SSEP models.

    Visualization of TASEP, ASEP, SSEP models with various update rules based on Zarja simulation library using QT GUI library.
    Downloads: 0 This Week
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  • 15
    genomemap
    A software framework to build maps for Neurospora crassa genome based on probabilistic models of meiotic recombination. A netbeans platform application is built to incorporate the computations. Project issues are mainatined at https://freecode4susant.atlassian.net/browse/GENOMEMAP
    Downloads: 0 This Week
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  • 16

    libfgen

    Library for optimization using a genetic algorithm or particle swarms

    libfgen is a library that implements an efficient and customizable genetic algorithm (GA). It also provides particle swarm optimization (PSO) functionality and an interface for real-valued function minimization or model fitting. It is written in C, but can also be compiled with a C++ compiler. Both Linux and Windows are supported.
    Downloads: 0 This Week
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  • 17

    Weibull-based reliability toolkit for R

    R package for Weibull analysis on (life-)time observations.

    This is a small R package for doing Weibull-based reliability analysis. This R package is now obsolete and has been superseded by 'project Abernethy' on http://r-forge.r-project.org/projects/abernethy/.
    Downloads: 0 This Week
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  • 18

    Gradesystem

    Gradesystem

    C programmed text-based software. Inputs : -Name of a course -Number of students -The 100% value of a mark -All the marks Then it estimates the Standard Deviation and grades, then assigns the marks to the grades inside a text.
    Downloads: 0 This Week
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  • 19

    Math Simulator

    A simulation software for numerical techniques.

    Math Simulator is a java-based application which simulates various mathematical techniques.It is extremely useful for the Engineering students and for professionals. Most importantly, unlike most others Math Simulator is an Application rather than a java - library. So, user is not required to have any computer background. A Unique feature of Math Simulator is that it allows you to save queries for later reference. Hence you can save the problems along with their results.
    Downloads: 3 This Week
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  • 20
    Tools to analyse and use passport data for biological collections.
    Downloads: 0 This Week
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  • 21
    Robust Correlation Toolbox

    Robust Correlation Toolbox

    Free Matlab toolbox to compute robust correlations

    The Robust Correlation Toolbox is a free collection of Matlab functions allowing to visualize data in univariate and bivariate space, check assumptions of normality and homoscedasticity and compute Pearson's and Spearman's, percentage bend, and skipped correlations with bootstrapped confidence intervals - see http://www.frontiersin.org/Quantitative_Psychology_and_Measurement/10.3389/fpsyg.2012.00606/full -- code moved to https://github.com/CPernet/robustcorrtool
    Downloads: 0 This Week
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  • 22

    DyMMM

    Dynamic Multispecies Metabolic Modeling framework

    The Dynamic Multispecies Metabolic Modeling (DyMMM [dĭm]) framework is a mathematical modeling tool that integrates multiple constraint-based metabolic models into a single dynamic community metabolic model. The DyMMM framework was formerly known as the DMMM framework. Please use the following citation for bibliographical purposes: Zhuang, K., Izallalen, M., Mouser, P., Richter, H., Risso, C., Mahadevan, R., & Lovley, D. R. (2011). Genome-scale dynamic modeling of the competition...
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  • 23
    C++ Airline Travel Market Simulator
    That project aims at studying and comparing typical airline IT methods, for instance RM-related algorithms. It works from a Unix/Linux/Mac command-line, and exposes basic APIs. It is being developed in C++, with Python wrappers for some components.
    Downloads: 0 This Week
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  • 24
    This is a Matlab software package for single molecule FRET data analysis.
    Downloads: 5 This Week
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  • 25
    RVASSOC is a simple program for performing various tests for association between genotypes and disease status using sequence variants from unrelated cases and controls. It was designed to accommodate both rare variants and missing genotypes.
    Downloads: 0 This Week
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