Search Results for "data visualization, research"
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Showing 31 open source projects for "data visualization, research"
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LabPlot
Data Visualization and Analysis
LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone. -
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Practically Random
statistical tests & psuedo- random number generators (RNGs, PRNGs)
Randon number generation & testing. The best suite of statistical tests for fast PRNGs anywhere. Multithreaded for speed, command line tools for automation, no upper limit on data size. Also, a variety of C++ pseudo-random number generators with well designed interfaces aimed at practical uses, not just research. -
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MCPower
MCPower — simple Monte Carlo power analysis for complex models
MCPower-GUI is a desktop application that provides a graphical interface for the MCPower Monte Carlo power analysis library. It guides users through the full workflow across three tabs: Model setup (formula input with live parsing, CSV data upload with auto-detected variable types, effect size sliders, and correlation editing), Analysis configuration (find power for a given sample size or find the minimum sample size for a target power, with multiple testing correction and scenario... -
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Uranie
Uranie is CEA's uncertainty analysis platform, based on ROOT
Uranie is a sensitivity and uncertainty analysis plateform based on the ROOT framework (http://root.cern.ch) . It is developed at CEA, the French Atomic Energy Commission (http://www.cea.fr). It provides various tools for: - data analysis - sampling - statistical modeling - optimisation - sensitivity analysis - uncertainty analysis - running code on high performance computers - etc. Thanks to ROOT, it is easily scriptable in CINT (c++ like syntax) and Python. Is is... -
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StatAnt
The package for statistical data analysis
Aspire to perfection. StatAnt is a standalone cross-platform application for statistical data analysis. Completely free. No donations required. Comes with absolutely no warranty. Rating: Everyone (All ages). MEDICAL DISCLAIMER: This software is not certified for use in healthcare and should not be used for diagnostic or treatment purposes. NOTICE FOR EU RESIDENTS: This software is NOT compliant with EU regulations, including GDPR and the AI Act. It is not intended for use within the... -
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Criterial
The package for statistical data analysis and applied mathematics
Putting truth before show-off. Criterial is an add-in for desktop versions of LibreOffice Calc (and forks) for statistical data analysis. The project is built on the refined expertise and core concepts of the AtteStat and StatAnt projects. Completely free. No donations required. Comes with absolutely no warranty. Rating: Everyone (All ages). MEDICAL DISCLAIMER: This software is not certified for use in healthcare and should not be used for diagnostic or treatment purposes. NOTICE FOR EU... -
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AtteStat
The package for statistical data analysis and applied mathematics
Less means - more power. AtteStat is an add-in for desktop versions of the Microsoft Excel. Winner of contest Microsoft Office Extensions (PC Magazine RE) in 2006. Registered 2002-05-23 with the Federal Service for Intellectual Property. Completely free. No donations required. Comes with absolutely no warranty. Rating: Everyone (All ages). MEDICAL DISCLAIMER: This software is not certified for use in healthcare and should not be used for diagnostic or treatment purposes. NOTICE FOR EU... -
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stkpp
C++ Statistical ToolKit
STK++ (http://www.stkpp.org) is a versatile, fast, reliable and elegant collection of C++ classes for statistics, clustering, linear algebra, arrays (with an Eigen-like API), regression, dimension reduction, etc. Some functionalities provided by the library are available in the R environment as R functions (http://cran.at.r-project.org/web/packages/rtkore/index.html). At a convenience, we propose the source packages on sourceforge. The library offers a dense set of (mostly) template... -
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ntx
Neutrality tests using the SNP site frequency spectrum
Tests on "neutrality" are designed to detect systematic deviations from chance patterns in genetic data. This tool computes for a given SNP site frequency spectrum some standard test statistics like Tajima's D, Fay & Wu's H, etc. Additionally, the user may adapt the tests to specific demographies by specifying non-standard first and secondary moments. These can be obtained e.g. from simulations. -
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AlphaPlot
Interactive scientific graphing and data analysis software.
Alpha Plot can generate different types of 2D and 3D plots (such as line, scatter, bar, pie, and surface plots) from data that is either imported from ASCII files, entered by hand, or calculated using formulas. The data is held in spreadsheets which are referred to as tables with column-based data (typically X and Y values for 2D plots) or matrices (for 3D plots). The spreadsheets as well as graphs and note windows are gathered in a project and can be organized using folders. The built-in... -
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gsasnp2
PubMed ID: 29562348 / DOI: 10.1093/nar/gky175
* GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data using GSA-SNP2", Nucleic Acids Research, Vol. 46(10), e60(2018)... -
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PANDA-view
An easy-to-use tool for data visualization and statistical analysis
PANDA-view, an affiliated tool of PANDA, includes the methods for differentially expressed protein detection, missing value imputation and the parametric and non-parametric statistical tests. Meanwhile, the most commonly-used data visualization methods are also implemented in PANDA-view. -
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MandelbrotExplorer
A program to calculate and represent the Mandelbrot set
This project is a C++ program to calculate and represent graphically the Mandelbrot fractal set, and/or the corresponding Julia sets, according to the seed Z0 given by the user as input. The user disposes of a graphical interface to control the program and modify conveniently some parameters, like the XY-scales, the XY map area, the Julia seed for the complex series iteration of Z(n+1)=Z(n)^2+a, being Z(0)=(X0,Y0) the seed, and "a in XY" the points to be calculated. The user can... -
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runjags
The 'runjags' R package and standalone JAGS extension module
This package provides high-level interface utilities for MCMC models via Just Another Gibbs Sampler (JAGS), facilitating the use of parallel (or distributed) processors for multiple chains, automated control of convergence and sample length diagnostics, and evaluation of the performance of a model using drop-k validation or against simulated data. Template model specifications can be generated using a standard lme4-style formula interface to assist users less familiar with the BUGS syntax. A... -
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psignifit is a toolbox to fit psychometric functions and test hypotheses on psychometric data. This is version 3 which will now predominantly support python.
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BiomeNet
BAYESIAN INFERENCE OF METABOLIC DIVERGENCE AMONG MICROBIAL COMMUNITIES
Metagenomics yields enormous numbers of microbial sequences that can be assigned a metabolic function. Using such data to infer community-level metabolic divergence is hindered by the lack of a suitable statistical framework. Here, we describe a novel hierarchical Bayesian model, called BiomeNet (Bayesian inference of metabolic networks), for inferring differential prevalence of metabolic networks among microbial communities. To infer the structure of community-level metabolic... -
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QPNet
Synchronous Petri Nets' emulator
QPNet (Quick Petri Net) is a fast Petri Nets' emulator, created by students of Moscow State Technical University of Radio Engineering, Electronics and Automation. It brings benefits for the educational process, while being under further development and extension. QPNet это быстрый эмулятор сетей Петри, созданный студентами МИРЭА. Он применяется в учебном процессе, а так же продолжает разрабатываться и эволюционировать. -
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KeplerDB
Timeseries databases management system
KeplerDB is a temporal database to store time/value entries where the type of value could be integer, float/double, boolean and string. KeplerDB is dedicated to be scalable and to create clusters of server allowing the user to analyse and store massing amount of data to monitor systems like computers, clusters, building and captors or financial systems like markets and accounts. The user can use KeplerDB to make data analysis on enormous amount of data (statistics and modelling). -
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phcfM
R package for modelling anthropogenic deforestation
phcfM is an R package for modelling anthropogenic deforestation. It was named after the REDD+ pilot-project 'programme holistique de conservation des forêts à Madagascar'. phcfM includes two main functions: (i) demography(), to model the population growth with time in a hierarchical Bayesian framework using population census data and Gaussian linear mixed models and (ii) deforestation(), to model the deforestation process in a hierarchical Bayesian framework using land-cover change data and... -
20
allink
Software for data analysis, image processing, simulations, solver.
Collection of utilities based on two basics classes: Matematica and VarData. Matematica) performs math operations on vectors and matrices for smoothing, interpolation, convolution, image processing... VarData) manipulate a structure of points connected by links. Addraw) openGL engine. ElPoly) analyze mechanical properties of polymer and membrane like structures. Addyn) perform molecular dynamics and Monte Carlo simulations and has a solver for 4th oder PDE. Avvis) perform all the... -
21
FreDec
Parallelized FREquency DEComposer algorithm
This is a parallelized algorithm performing a decomposition of the time-series data into a number of sinusoidal components, disentangling them from the white Gaussian noise. The algorithm analyses all suspicious frequencies, including the ones that look like an alias at a glance, but may become preferable later. After selection of the initial frequency candidates, the algorithm passes through all their possible combinations and estimates their multi-frequency statistical significance. In the... -
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QTASEP
Visualization application for various TASEP, ASEP and SSEP models.
Visualization of TASEP, ASEP, SSEP models with various update rules based on Zarja simulation library using QT GUI library. -
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libfgen
Library for optimization using a genetic algorithm or particle swarms
libfgen is a library that implements an efficient and customizable genetic algorithm (GA). It also provides particle swarm optimization (PSO) functionality and an interface for real-valued function minimization or model fitting. It is written in C, but can also be compiled with a C++ compiler. Both Linux and Windows are supported. -
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wavg
Calculator of weighted averages.
A simple program to calculate weighted averages. It is developed in C++ using Qt. So far I tried to compile it only on Linux. It can also generate a graph of the data and the average, using gnuplot. -
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This software computes likelihoods for infinitely-many-sites sequence data under multiple merger coalescents. The likelihood can be computed exactly or approximated via importance sampling.