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Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST.
Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam.
...Though, initially developed for experiments related to fretting wear but can be effectively used to interpret experimental data from any field. The attached files contain source code as well as a sample MATLAB (.mat) data file of 13 variables. It could be replaced to the data file of your choice. The code is open source but you are requested to give credits if used. Additionally, it also has some useful functions for exporting and generating publication quality figures for different kind of figures in MATLAB
This project (CvHMM) is an implementation of discrete Hidden Markov Models (HMM) based on OpenCV. It is simple to understand and simple to use. The Zip file contains one header for the implementation and one main.cpp file for a demonstration of how it works. Hope it becomes useful for your projects.