Showing 54 open source projects for "parallel computing"

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  • 1

    Fast Matrix for Java

    General purpose matrix utilities for Java in Parallel Computing

    Fast Matrix for Java (fm4j) is a general-purpose matrix utility library for computing with dense matrices. fm4j encapsulated different underlying implementations and select the optimal one in run-time depending on the size of the input matrix. Moreover, fm4j employs Java (Tm) Concurrency to take advantage of the computation power of multi-cor processors.
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  • 2

    PPSeq: Parallel NGS Analysis

    Parallel Processing for Next-Generation Sequencing (NGS) Analysis

    High-throughput next generation sequencing (NGS) technology has quickly emerged as a powerful tool in many aspects of biomedical research. However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive parallel processing (MPP) systems.
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  • 3
    AWK~plus is the next generation script practice environment. The AWK Language specifications and a main extension of GNU GAWK. Combination of Dynamic and Static typing. Parallel computing that a lock is free, and is thread safe at a language level.
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  • 4
    Tuple Spaces

    Tuple Spaces

    Tuple space with time outs and transactions.

    Java implementation of a Tuplespace. Moved to https://github.com/mike-k-houghton/tuplespace A Tuple is an ordered list of items. A Tuple Space is a form of associative memory where entries, tuples, are stored in the space and are retrieved using search criteria that are based on the intrinsic properties of the tuples. The two key operations are put get And that is it! There are refinements on these operations including, for example, timeouts where the tuple will only exist...
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  • 5
    Project provides a set of concurrent building blocks (Java & C/C++) that can be used to develop parallel/multi-threaded applications. Components are grouped into 4 categories: 1.Data Structures 2. Parallel Patterns 3.Parallel functions 4.Atomics and STM
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  • 6
    cca-forum
    Cca-forum unifies the Common Component Architecture tools and tutorial. It includes the CCA specifications, the Ccaffeine framework for HPC, and related tools. These support multilanguage scientific and parallel computing.
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  • 7
    GridABM is an easy-to-use toolkit to develop high-performance agent-based models (ABMs) in Repast. GridABM facilitates large-scale simulation of ABM on multicore computers, local computing clusters, or computational grids.
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  • 8
    Distributed Parallel Programming for Python! This package builds on traditional Python by enabling users to write distributed, parallel programs based on MPI message passing primitives. General python objects can be messaged between processors. Ru
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  • 9
    Roomy is a programming language extension for writing parallel disk-based applications. All details of parallelism and disk I/O are hidden within the Roomy library.
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  • 10
    Tsunami Programming Language
    Tsunami is an open-source high performance computing language. With it you can write streaming data-parallel algorithms that utilize GPGPUs for orders-of-magnitude speed-up with the ease of writing sequential algorithms.
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  • 11
    PyMW is a Python module for parallel master-worker computing in a variety of environments. With the PyMW module, users can write a single program that scales from multicore machines to global computing platforms.
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  • 12
    Parallelizable is a tiny framework in complement for java.util.conccurent api. Parallelizable is an abstract class to extend for making asynchronous parallel execution on a synchronous task. Very usefull if task often calls a very long process.
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  • 13
    Meerkat is a distributed programming environment. It consists of a virtual machine which is suited to parallel processing. The data model is based on the concept of actors, although it is much more permissive than the traditional description.
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  • 14
    LIME (Less-is-More) is parallel/concurrent programming environment based on C. Internally, it uses XML technology to describe tasks and their dependencies. Externally, it offers the ANSI C99 programming as well as a set of visually-oriented interfaces.
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  • 15
    Python Integrated Parallel Programming EnviRonment (PIPPER), Python pre-parser that is designed to manage a pipeline, written in Python. It enables automated parallelization of loops. Think of it like OpenMP for Python, but it works in a computer cluster
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  • 16
    The CodeTime platform covers every aspect of parallel software from authoring, through distribution, to run-time. Its goals are: high programmer productivity; write once, run high performance anywhere; and wide acceptance.
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  • 17
    A data parallel scientific programming model. Compiles efficiently to different platforms like distributed memory (MPI), shared memory multi-processor (pthreads), Cell BE processor, Nvidia Cuda, SIMD vectorization (SSE, Altivec), and sequential C++ code.
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  • 18
    pRPL is a general-purpose parallel Raster Processing C++ programming Library. It enables the implementation of parallel raster-based algorithms without requiring a deep understanding of parallel computing, and greatly reduces the development complexity.
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  • 19
    MapReduce is a simple and flexible parallel programming model initially proposed by Google for large scale data processing in a distributed computing environment. This project implements the MapReduce runtime and API for the Cell processor platform.
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  • 20
    Brook is an ANSI C like general purpose stream programming language and is designed to incorporate the ideas of data parallel computing and arithmetic intensity into a familiar, efficient language. Has OpenMP CPU, OpenGL, DirectX 9 and AMD CTM backends.
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  • 21
    This project provides a distributed testing environment that extends JUnit. Giving the developer/tester an ability to run remote JUnits and create complex test suites that are composed of several remote JUnit tests running in parallel or serially.
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  • 22
    An open source,platform independent,technical web programming language using MATLAB in background, that supports 3-Tier Architecture (Web-Business-DB) including Distributed Computing and Parallel Processing via remote procedure calls and web services.
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  • 23
    The project is a “data-parallel” C++ library to teach parallel programming concepts. We intend to make this library portable, small, and easy to extend to work with real parallel message passing systems such as MPI and PVM. Darrell Raymond Ulm
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  • 24
    The software provides a means to form a simple Java cluster. It can be also viewed as a parallel computing library in Java. The project is based on the following <a href='http://www-106.ibm.com/developerworks/java/library/j-super.html'>article</a>
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  • 25
    This project is setup to maintain a set of Javaparty codes. This includes Javaparty benchmarks and applications. Javaparty (http://www.ipd.uka.de/JavaParty/) is a Java extension for easy and efficient parallel programming. It does so by extending the
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