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Showing 19 open source projects for "paper"
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DeepSee
Visualize deep ocean biogeochemical sediment samples in 2D and 3D!
DeepSee is an interactive workspace for deep ocean scientists to upload sediment core data and map images and see their sampling history displayed across multiple connected views at once! 🦑🦀🐚 🚀 For a live demo, visit: https://www.its.caltech.edu/~datavis/deepsee/ 🌱 To get started, visit our Wiki: https://sourceforge.net/p/deepsee/wiki/Home/ 🧑💻 To modify DeepSee for your own project, visit our GitHub repository: https://github.com/orphanlab/DeepSee/ --- Created by Adam Coscia,... -
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StochSD
CSS package for contin., discrete and combined modelling & simulation
...StochSD eliminates the many problems and errors from modelling discrete objects as continuous. This means that the results from CSS and DES modelling now can be fully consistent. (See the paper "The Full Potential of Continuous System Simulation Modelling" by Gustafsson L & Sternad M.) In particular, StochSD includes features for stochastic modelling and post analysis of multiple simulations followed by presentation of the results in statistical form. Tools for Sensitivity Analysis, Optimization and Statistical Analysis are parts of StochSD. -
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This is a standalone program for a) the calculation of diffusion coefficients of sorbates inside nanoporous materials at different loadings by using transition rate constants and for b) solving the master equation for a system consisted of a large number of unit cells per each direction. It is based on the following published paper "Kolokathis, P. D., Braun, O. M.. J. Comput. Chem. 2019, 40, 2053– 2066. DOI: 10.1002/jcc.25857"
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syfluid
Fancy interactive fluid simulation for gfx fans, VJs and demo coders
...If they are lower than 30, then reduce the quality parameter that you find in the menu from 200 to e.g. 100. For very fast graphic cards, try 400 and above. This fluid simulation is based on on Jos Stam's paper: http://www.dgp.toronto.edu/people/stam/reality/Research/pdf/GDC03.pdf -
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BioFVM
3-D diffusion solver for biological problems
...BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations. Bioinformatics 32(8): 1156-8, 2016. DOI: 10.1093/bioinformatics/btv730 method paper: http://dx.doi.org/10.1093/bioinformatics/btv730 -
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...With the basic library one can solve heat flow equations, Maxwell equations, and solid mechanical problems. Several add-ons are available for particular application classes. New paper: J. Schöberl: "C++11 Implementation of Finite Elements in NGSolve", ASC Report 30/2014, Institute for Analysis and Scientific Computing, Vienna University of Technology, 2014 http://www.asc.tuwien.ac.at/~schoeberl/wiki/publications/ngs-cpp11.pdf
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GenCodeGenerator
C++ class to generate biologically plausible genetic codes
The "GeneticCode" C++ class is designed to generate versions of the genetic code subject to the requirements of the three major models of the genetic code origin and evolution (about these models see, e.g., Koonin & Novozhilov, 2009, IUBMB Life). This class was written specifically to perform statistical test for the paper Makukov & shCherbak (2017), but it might be used for a wider class of studies related to the genetic code. By default, the class "GeneticCode" generates alternative genetic codes, with the reqirement of block structure, and, optionally, with the assumption of stereochemical or biosynthetic models (to impose the assumption of the adaptive model, simply filter the codes using the error_cost() function). ... -
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Econball
Equation of stock trading simplified to game of moving resizing balls
...Those who change to the majority side lose, and those who change to the minority side win, since it is scaled to the average. Its the same math as Matching Pennies and Odds And Evens game which are Rock Paper Scissors with 2 choices instead of 3 (buy vs sell). You see this in the size of balls changing depending where they move. Think of it as a 2d seesaw surface that never tilts because the masses of balls are adjusted to always balance. This is the early start of a game based on that econ theory. Econ is boring in number and symbol form, but as a realtime game its more like dancing. -
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Folder
Toolbox for modelling deformation in layered media in 2D
...Folder contains a separate application, which illustrates analytical solutions of growth rate spectra for buckling and necking of a single viscous layer. Check out the companion paper: doi:10.1016/j.jsg.2016.01.001 -
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Open Source Monte Carlo Simulation platform for particle level simulation of light scattering from generated paper structures
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A Disk Scheduling Simulator tool. With an intuitive GUI interface and command line functionality. Built using both VC and VB. Currently supports SSTF,LOOK,CLOOK,SCAN and CSCAN algorithms. Rotational latency is also optionally supported.
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Maxima poles-zeros for analog circuits
Maxima script for symbolic analysis of analog integrated circuits
...DC transfer function, zeros, poles result simplified so main contributing elements can be easily identified. Poles and zeros approximation principle mainly taken from the paper "INDIRECT FEEDBACK COMPENSATION TECHNIQUES FOR MULTI-STAGE OPERATIONAL AMPLIFIERS" by Vishal Saxena Usage examples also can be taken from "Maxima Opamp Analisys" project Any comments bug reports and improvement suggestions are welcomed! ** The project based on script and concept initially developed by Ram Livne ** -
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Migration of cells in a social context
Model of the migration of 3T3 fibroblast cells in social context
...There were a few errors in the physical model of the concentration field of secreted chemokine surrounding each cell, together with a few coding errors. All have been corrected, the model refitted, and all simulations presented in the paper repeated. Results from this corrected model are on par with the published results. See pdf file for details. -
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This is the program and data to accompany both the thesis and paper under the name A MINE ALTERNATIVE TO D-OPTIMAL DESIGNS FOR THE LINEAR MODEL This contains the program and summary of the data used for the paper.
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AMESProject
A "simple but not too simple" laboratory for wholesale power markets.
The wholesale power market design proposed by the U.S. Federal Energy Regulatory Commission (FERC) in an April 2003 white paper [FERC 2003] encompasses the following core features: 1. Central management by an independent market operator. 2. A two-settlement system consisting of a day-ahead market supported by a parallel real-time market to ensure continual balancing of supply and demand for power. 3. Management of grid congestion by means of locational marginal pricing (LMP), i.e., the pricing of power by the location and timing of its injection into, or withdrawal from, the transmission grid. 4. market power oversight and mitigation. -
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Python and Matlab classes for object oriented simulations of an integrated mechanical pulp and paper mill.
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Java package to study a clustering model described in the paper \"Novel Clustering Algorithm Based Upon Games on Evolving Network\" by Q. Li, Z. Chen, Y. He and J-P. Jiang (in arxiv: http://arxiv.org/pdf/0812.5064v1), generalizations and similar issues.
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This project provides a tool for investigating the starting behaviour of Vertical-Axis Wind Turbines. These programs are those used in the paper "Darrieus Turbines- the Physics of Self Starting", by R. Dominy, N. Hill and G. Ingram.
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