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Showing 34 open source projects for "include"
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MzDOCK - Multiple Ligand Docking Tool
MzDOCK is A Virtual Screening Tool For Drug Discovery Research
- Molecular Docking Virtual Screening Tool To Aid In Drug Discovery Research. - Published in Wiley, Journal of Computational Chemistry . Link: https://onlinelibrary.wiley.com/doi/abs/10.1002/jcc.27390 - Developed with Synchronized functioning of Python and Batch scripts -Integerated With Pymol-open-source for visualizing interaction (PSE file) generated from MzDOCK - Integrated with Molecule Drawing Tool - JSME Editor - If you are facing any issues or for queries . Contact us -... -
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caesar-lisflood
CAESAR-Lisflood landscape evolution model
...These sourceforge pages provide downloads of the .exe and the source code for CAESAR-lisflood and instructions and additional documentation can be found in the Wiki tab. These include a full description of all the parameters used in CAESAR, instruction videos and other information. Discussion and support can be found here: https://groups.google.com/forum/#!forum/caesar-lisflood -
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Eleana
Program for the analysis of spectroscopic data, in particular EPR(ESR)
...It allows you to import data from Bruker spectrometers such as Elexsys or EMX and data from any ASCII file or imported from the clipboard. The program is under constant development, but already has many functions implemented for spectral analysis. Some of the basic functions include: baseline corrections, filtering, spectral clipping, integration / differentiation, pseudomodulation, filtering, etc. More advanced functions are: Forward / Inverse Fourier Transforms, Hilbert Transforms, Nonlinear Curve Fit, Global Analysis Fit of Multiple Curves, and many other. It is also possible to create your own plugins extending Eleana's functionality. -
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Statistics101 - Resampling Statistics
Use simulation to perform statistical analyses.
Statistics101 is an Integrated Development Environment (IDE) that uses a simple, powerful language called “Resampling Stats” to develop Monte Carlo programs to analyze and solve statistical problems. The original Resampling Stats language and computer program were developed by Dr. Julian Simon (https://www.juliansimon.com/) and Peter Bruce (https://www.scientificamerican.com/author/peter-bruce/) as a new way to teach Statistics to social science students. Of course, social science students... -
Train ML Models With SQL You Already KnowBuild and deploy ML models using familiar SQL. Automate data prep with built-in Gemini. Query 1 TB and store 10 GB free monthly.
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StochSD
CSS package for contin., discrete and combined modelling & simulation
StochSD (Stochastic System Dynamics) is a unique CSS package for continuous, discrete and combined modelling and simulation. StochSD eliminates the many problems and errors from modelling discrete objects as continuous. This means that the results from CSS and DES modelling now can be fully consistent. (See the paper "The Full Potential of Continuous System Simulation Modelling" by Gustafsson L & Sternad M.) In particular, StochSD includes features for stochastic modelling and post... -
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PCRaster
PCRaster environmental modeling software
...Application domains are amongst others hydrology (rainfall-runoff, global water balance, groundwater (with Modflow)), ecology, or land use change. Two scripting languages (PCRcalc and Python) include a rich set of spatial operations for manipulating and analysing raster maps. A Python framework supports Monte Carlo simulations and data assimilation (Ensemble Kalman Filter and Particle Filter). The Aguila tool allows for the interactive visualisation of stochastic spatio-temporal data. -
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PeerSim is a simulation environment for P2P protocols in java. Its features include easy configuration, extendability and high performance.
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Quan is designed to model physical quantities in C++ programs. Advantages include automated dimensional analysis checking, automatic unit conversions, self documentation of code.
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eMatrix
A C++ Matrix Library
eMatrix is a lightweight matrix library developed in C++. EMatrix is designed to help solve engineering problems requiring linear algebra. eMatrix is OS independent and is fairly portable. New features include inv(A) and det(A). -
Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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Epidemic-Simulation
Simulate an epidemic like the Corona Pandemic and look at statistics
...Lockdowns, social isolation, being close to somebody who died and being sick makes unhappy. Being close to other (living) people makes happy (human relation). The satistics currently include number of: susceptible, infectious, recovered, deaths; total happiness and happiness of single persons. Acceptance of lockdowns depends on personality and decreases with time. -
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The TRANSIMS Studio application is an integrated development environment for the TRansportation ANalysis and SIMulation System (TRANSIMS). Components include a run time environment to execute TRANSIMS in parallel, as well as a full featured GUI.
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RTC-simulator
Simulation and Control of Processing Plants
...A tutorial gives brief background to the theory and programming of each application, plus a stepwise set of objectives to illustrate the main features. The simulations include a number of the techniques described in Applied Process Control – Essential Methods, and that book’s accompanying volume, Applied Process Control – Efficient Problem Solving. Actually, RTC is not merely a suite of simulations: Each application can be switched from “MODEL” to “PLANT” mode for real-time control of equipment through a somewhat basic interfacing arrangement. ... -
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GMES
GMES is a free Python package for FDTD electromagnetic simulations.
GMES is a free finite-difference time-domain (FDTD) simulation Python package developed at GIST to model photonic devices. Its features include simulation in 1D, 2D, and 3D Cartesian coordinates, distributed memory parallelism on any system supporting the MPI standard, portable to any Unix-like system, variuos dispersive ε(ω) models, CPML absorbing boundaries and/or Bloch-periodic boundary conditions, and arbitrary material and source distributions. GMES officially stands for GIST Maxwell’s Equations Solver. -
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TinkerCell is a software for synthetic biology. The visual interface allows users to design networks using various biological "parts". Models can include modules and multiple cells. Users can program new functions using C or Python. www.tinkercell.
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ECMM
OMNET++ implementation of the Enhanced Community-based Mobility Model
...One specific model, namely the Enhanced Community-based mobility model, is very suitable for opportunistic routing research comparing to the others, because of its advanced properties. These include a pause period, conformance to the existing social ties and the ability to produce periodical epochs during the simulation. This is therefore, the main mobility model provided by this project. Up to now, OMNET++ and the INET and INETMANET frameworks do not include an opportunistic routing protocol implementation. Additionally, they lack socially-aware mobility model support, thus making the simulation environment not suitable for opportunistic and delay-tolerant research, especially for Mobile Social Network. -
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ICN Simulator
An ICN Simulator based on the Blackadder paltform.
This is a basic implementation of an Information-Centric Network simulator, following the architecture suggested by Blackadder. It was by the University of Essex for the needs of the PAL project and it include Publishers, Subscribers, RV and a Topology Manager. -
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Magnum Opticus
Optical Design Software
Optical design application geared to telescopes and other optical systems. Features include layout design, optimization, standard expected output, ability to import ZMX and LNS files -
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WOLFSIM: Wideband Optical FDTD Simulator
FDTD Electomagnetic Wave Simulation Software
WOLFSIM is a Finite-Difference Time-Domain electromagnetic simulator, designed to be easy to use but still very powerful, developed and maintained by researchers at North Carolina State University. It's features include: -1D, 2D, and 3D structures that are periodic in 1 or 2 dimensions -Materials that are anisotropic in permittivity and conductivity -Obliquely incident sources -Built-in vectorial (i.e. full polarization) near-to-far-field transformation See these publications for full details on the algorithm: http://www.ece.ncsu.edu/oleg/files-wiki/6/62/SPIE_12_Miskiewicz_wolfsim3D.pdf http://www.ece.ncsu.edu/oleg/files-wiki/1/13/OptExpress07_OH.pdf -
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Lagrange Rally 3D
3D vehicle simulator based on Lagrangian dynamics to simulate dynamics
3D vehicle simulator in which vechicle's configuration as a whole (articulated body) , is represented by a 'vector' of generalised coordinates. so concepts like usual position and orientation of main body and wheels is all defined by the generalised coordinates.Using Lagrangian dynamics, theese coordinates are evolving in time in a realistic manner according to F=ma but as if there were also all constraint forces concretasing the presence of joints: hinge, prismatic, rigid connection, etc.... -
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Publicly available copy of the Featflow2 project. WARNING: Source does not include the "libraries" subdirectory which is necessary for development in Windows due to copyright reasons. Ask us if you need it!
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The Self-Organizing Map Maker for Education and Research. Features include 3D-visualization of the training process, various 2D and 3D map topologies, easy extensibility to additional topologies.
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Pamvotis is a Wireless LAN Simulator for all the current physical layer extentions of the IEEE 802.11 (IEEE 802.11 a/b/g) standard and for the IEEE 802.11e Draft for Quality of Service in WLANs.
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Logic Gate Simulator is an open-source tool for experimenting with and learning about logic gates. Features include drag-and-drop gate layout and wiring, and user created "integrated circuits".
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thvortex-vmlab
VMLAB User Components for AVR peripherals and external components
...You can also Download Components as pre-compiled DLL files from this site. The "AVR Peripheral" components should be installed to the "mculib" directory; all other components are installed in the "userlib" directory. A few components include a "readme.txt" with additional setup instructions. Most components are licensed under the LGPLv2 (or higher). A few of the older components are released into the Public Domain.