Search Results for "open-shell" - Page 19
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Showing 1225 open source projects for "open-shell"
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SunlightCBM is a suite of perl scripts for constraint-based modelling and flux-balance analysis in metabolic networks.
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JGridMap
Java project for fast and easy visualisation of objects in a grid.
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Libpsht is a collection of algorithms for efficient conversion between maps on the sphere and their spherical harmonic coefficients. It supports a wide range of pixelisations (including HEALPix, GLESP, and ECP). Development for this libary has stopped; its successor is libsharp (http://sourceforge.net/projects/libsharp).
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Carnaval est un logiciel destiné au calcul de masques et d'ensoleillement. La version actuelle permet de calculer les trajectoires solaires et les masques de terrain liés au relief (modèle issu des données SRTM). Les développements ont été repris par Sober Software. Merci de visiter ce site pour télécharger la dernière version et accéder aux nouvelles fonctionalités : www.sober-software.com
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DReAMSim
Dynamic Re-configurable Autonomous Many-task Simulator
DReAMSim provides a simple simulation framework for modeling homogeneous and/or heterogeneous (re)-configurable processing elements in a large-scale distributed environment. In particular, DReAMSim enables users to model task scheduling techniques at a preliminary design stage in order to investigate their performance potential. The simulation framework makes it easy to extract various performance and resource utilization related statistics to study the behavior of different task... -
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ACADO Toolkit
Toolkit for Automatic Control and Dynamic Optimization
ACADO Toolkit is a software environment and algorithm collection for automatic control and dynamic optimization. It provides a general framework for using a great variety of algorithms for direct optimal control, including model predictive control, state and parameter estimation and robust optimization. ACADO Toolkit is implemented as self-contained C++ code and comes along with user-friendly MATLAB interface. The object-oriented design allows for convenient coupling of existing optimization... -
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birgHPCC
Rapid CUDA Cluster Deployment
birgHPCC is a major improvement over birgHPC (http://sourceforge.net/projects/birghpc/). While retaining the major functions of the original birgHPC, including automated computing cluster conversion and auto slots detection, the new version (birgHPCC) is capable of creating and configuring a compute unified device architecture (CUDA) computing cluster, hence the extra “C” in the name. In addition to the increase in image size (less than 2 gigabytes) and a new Linux base (previously Debian,... -
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SPSens
Stochastic parameter sensitivity analysis for chemical networks
SPSens is a complete software package written in C that estimates parameter sensitivities for stochastic models of chemical and biochemical reaction networks using Monte Carlo (MC) stochastic simulations. It is possible to estimate sensitivities with respect to system parameters using the following algorithms: finite difference methods (crude monte carlo, common reaction path, coupled finite differences); likelihood ratio methods; and regularized pathwise derivatives. Additionally the... -
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GeneSim is a code generator for dynamic systems: it takes an XML description of the system and produces the code that executes it. The typical usage of GeneSim is to generate simulators of engineering systems.
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AMESProject
A "simple but not too simple" laboratory for wholesale power markets.
The wholesale power market design proposed by the U.S. Federal Energy Regulatory Commission (FERC) in an April 2003 white paper [FERC 2003] encompasses the following core features: 1. Central management by an independent market operator. 2. A two-settlement system consisting of a day-ahead market supported by a parallel real-time market to ensure continual balancing of supply and demand for power. 3. Management of grid congestion by means of locational marginal pricing (LMP), i.e., the... -
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A C++ class to enable prediction of the reflectance spectrum of two overprinted inks (i.e., solids), using the inverted Viggiano trapping equation.
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An Educational Toolbox on Data Communications, including Encoding Schemes, Bit-Error-Rate (BER), Noise and Spectral Analysis for Scilab
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The Self-Organizing Map Maker for Education and Research. Features include 3D-visualization of the training process, various 2D and 3D map topologies, easy extensibility to additional topologies.
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Climate Modeling
Benefit Your Learning of Climate Modeling
The goal of this project is to provide a couple of Fortran code to those students who selected the course of "Climate Modeling" in the department of atmospheric and oceanic sciences at Peking University. 这个项目的目标是给选择“气候模拟”课程（北京大学大气与海洋科学系）的同学提供与课程学习有关的源代码程序。 We are subject to GNU/GPL license and happy to open the code to the public. 我们遵守GNU/GPL协议，并乐于开放代码给所有需要的人。 -
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JECL, pronounced "Jekyll", is an open-source Java library implementing a variety of evolutionary algorithms. The goal is to provide a uniform interface for describing problems, running evolutionary algorithms, and accumulating results. The Java Evolutionary Computation Library is no longer under active development. We suggest the MOEA Framework (http://www.moeaframework.org/), jMetal (http://jmetal.sourceforge.net/), ECJ (http://cs.gmu.edu/~eclab/projects/ecj/) or JGAP (http://jgap.sourceforge.net/) as alternatives.
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MICROMECHANICS
A collection of lecture notes and accompanying code on micromechanics
The collection MICROMECHANICS (micromechanics.zip) includes: (1) lecture notes (microbook.pdf) on the analysis of heterogeneous materials and homogenization, and (2) source codes (microcode.tar.bz2) that accompany the computational exercises in Part II of the notes. Instructions on using the codes are given in the README file of each exercise. Further instructions can be found in the file microcode.tar.bz2. The MATLAB codes are used for visualization, evaluating analytical bounds... -
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The fast2armc program translates source code of a counter automata model for FAST(er) tool to the ARMC prolog syntax.
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GemSIM is a software package for generating realistic simulated next-generation sequencing reads with quality score values. Both Illumina and Roche/454 reads (single or paired end) can be simulated using appropriate empirical error models.
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YANG (Yet Another Network Generator - Java) enables you to generate social networks given various social rules observed in the real population. Uses: generate realistic networks to be used in individual-centric models, teaching or benchmarking.
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Substitution cipher cracker based on ant colony optimization metaheuristic. Includes GUI. Everything is in czech because this is a school project :(
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PetriNetExec: Java Embeddable Petri Nets
PetriNetExec a library for embedding Petri Nets into Java applications
Briefly said, PetriNetExec is an open-source Java library which allows you to embed Petri Nets into your Java application. Using PetriNetExec you can define places and transitions, connect them using arcs and inhibitors, define the initial marking and then fire events and see how tokens flow into the network. * PetriNetExec does not provide a GUI for editing the network nor will it provide in the near future. -
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Bio.Cairn is a library of highly-configurable high-performance modules to support numerical simulators for biological processes. Written in ANSI-standard C++, it makes extensive use of template metaprogramming and the BOOST libraries.
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nanoTuring
A minimal Turing machine simulator
https://github.com/thibaultduponchelle/nanoturing -
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QDC (quick direct-method controlled) is an optimized exact implementation of the Gillespie's direct-method. It is designed for biochemical simulations when there is the need of dynamic parameters whose values can change during the simulation.
