Showing 251 open source projects for "using"

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  • 1

    SPSens

    Stochastic parameter sensitivity analysis for chemical networks

    SPSens is a complete software package written in C that estimates parameter sensitivities for stochastic models of chemical and biochemical reaction networks using Monte Carlo (MC) stochastic simulations. It is possible to estimate sensitivities with respect to system parameters using the following algorithms: finite difference methods (crude monte carlo, common reaction path, coupled finite differences); likelihood ratio methods; and regularized pathwise derivatives. Additionally the package includes basic stochastic simulation algorithms. ...
    Downloads: 0 This Week
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  • 2
    ACADO Toolkit

    ACADO Toolkit

    Toolkit for Automatic Control and Dynamic Optimization

    ACADO Toolkit is a software environment and algorithm collection for automatic control and dynamic optimization. It provides a general framework for using a great variety of algorithms for direct optimal control, including model predictive control, state and parameter estimation and robust optimization. ACADO Toolkit is implemented as self-contained C++ code and comes along with user-friendly MATLAB interface. The object-oriented design allows for convenient coupling of existing optimization packages and for extending it with user-written optimization routines.
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  • 3
    This utility, lingen, implements evolution of native machine code via linear genetic programming. The assembly level code uses a subset of assembly language which manipulates and performs calculations using the floating point unit (FPU) of the CPU.
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  • 4
    predictOP
    A C++ class to enable prediction of the reflectance spectrum of two overprinted inks (i.e., solids), using the inverted Viggiano trapping equation.
    Downloads: 0 This Week
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  • 5
    MICROMECHANICS

    MICROMECHANICS

    A collection of lecture notes and accompanying code on micromechanics

    The collection MICROMECHANICS (micromechanics.zip) includes: (1) lecture notes (microbook.pdf) on the analysis of heterogeneous materials and homogenization, and (2) source codes (microcode.tar.bz2) that accompany the computational exercises in Part II of the notes. Instructions on using the codes are given in the README file of each exercise. Further instructions can be found in the file microcode.tar.bz2. The MATLAB codes are used for visualization, evaluating analytical bounds and estimates as well as in the generation of digital and particulate microstructures. The Fortran codes are based on the finite element method in linear and nonlinear settings, the latter capable of finite deformations with damage. ...
    Downloads: 5 This Week
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  • 6
    GemSIM is a software package for generating realistic simulated next-generation sequencing reads with quality score values. Both Illumina and Roche/454 reads (single or paired end) can be simulated using appropriate empirical error models.
    Downloads: 1 This Week
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  • 7
    PetriNetExec: Java Embeddable Petri Nets

    PetriNetExec: Java Embeddable Petri Nets

    PetriNetExec a library for embedding Petri Nets into Java applications

    Briefly said, PetriNetExec is an open-source Java library which allows you to embed Petri Nets into your Java application. Using PetriNetExec you can define places and transitions, connect them using arcs and inhibitors, define the initial marking and then fire events and see how tokens flow into the network. * PetriNetExec does not provide a GUI for editing the network nor will it provide in the near future. That is not really a feature :-) but to those of you able to cope with this news I suggest to read further; * Petri Nets are created with PetriNetExec by writing Java code and using the provided API; * PetriNetExec provides a simple yet powerful callback mechanism allowing you to actually do something when events are fired and the network status is changing...
    Downloads: 0 This Week
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  • 8
    MIDA

    MIDA

    Mitochondiral Infectious Damage Adaptation (MIDA) model of aging

    ...The provided source code is written in C and performs the time integration of the master equation for the time-evolution of the probability to find mitochondria in states of quality q at time t. Output is generated in terms of data files and the graphical visualization of readout parameters is automatically performed using the Graphical Layout Engine (GLE; see: http://glx.sourceforge.net/). Please, send email to thilo.figge<at>hki-jena.de to request a copy of the source code.
    Downloads: 0 This Week
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  • 9

    IPSA - Inventor Physics Simulation API

    Easy to use physics simulation combining ODE with OpenInventor.

    Create phyiscal simulations easily through IPSA which combines the OpenInventor 3D API with the Open Dynamics Engine (ODE). Scenes are read from .iv files and simulated in the supplied viewer applications. Find it at: http://ipsa.sourceforge.net
    Downloads: 0 This Week
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  • 10

    ViennaFEM

    A finite element solver using state-of-the-art programming techniques.

    ViennaFEM is a library-centric implementation of the finite element method in C++. It features a symbolic math kernel, which manipulates the strong or weak form of the problem and automatically derives the discrete form. ViennaFEM is built on top of the following libraries: ViennaMath provides the symbolic math kernel, ViennaGrid (with ViennaData) allows for a generic grid handling and quantity storage, while ViennaCL provides the linear solvers and GPU acceleration.
    Downloads: 0 This Week
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  • 11
    The goal of this project is to provide a platform for simulating biological aging and evolution of the population. The simulation is done using Penna bit-string model. Its based on the mutation accumulation theory.
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  • 12
    DIFFR is a menu-driven graphical software whereby the problem of a plane wave diffraction on a rough surface can be solved using several numerical and approximate methods.
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  • 13
    Global Epidemic Simulator

    Global Epidemic Simulator

    A platform for modelling influenza-like epidemics and containment

    The Global Epidemic Simulator is a platform for modelling directly transmissible human diseases such as influenza, and testing intervention policies that may reduce the duration or severity of an outbreak of such a disease. Building on previous work, this model is spatial and individual-based, using various geographical and demographic data sources to place households at absolute locations, populated with individuals of specific ages who each attend schools or workplaces situated in their vicinity. The significant advance of this project over previous work is the global nature of simulation, the memory and performance requirements of which motivate us towards a multi-core, multi-computer solution.
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  • 14

    CUDA-SPHERE-FWD-MEEG

    CUDA accelerated spherical model forward solution for EEG/MEG

    CUDA-SPHERE-FWD-MEEG is a CUDA C based toolkit which provides a GPU based implementation of the spherical model forward solution for the 306 channel Elekta Neuromag MEG system and the EEG. The 1-Sphere forward solution for the MEG and the 4-Sphere forward solution for the EEG is implemented in CUDA C and an accelerated solution is obtained using the NVIDIA GPU when the solution is calculated for a large number of dipoles (on the order of 15000 and above) and sensor locations. Speedup by a factor of 22 and 32 is obtained for the EEG and MEG solution respectively when compared to the fastest CPU implementation available in the public domain. The complete source code and pre-compiled binaries are also made available via an open source license (GPL Version 3). ...
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  • 15
    DASM is a new simple platform which helps programmer to implement and evaluate any distributed algorithm. Programmer can implement his/her distributed algorithm using DASM primitives and monitors the results in diagrams during execution.
    Downloads: 0 This Week
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  • 16
    Logisim
    An educational tool for designing and simulating digital logic circuits, featuring a simple-to-learn interface, hierarchical circuits, wire bundles, and a large component library. As a Java application, it can run on many platforms.
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    Downloads: 7,950 This Week
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  • 17
    A MATLAB toolbox for time series analysis using state space models. Supports fully interactive model construction with MATLAB objects and efficient Kalman filter backend implemented in c.
    Downloads: 0 This Week
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  • 18
    FOR_MultiLift
    A school project of a multi lift system using Qt signal and slots metaobjects.
    Downloads: 0 This Week
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  • 19
    An Economy Simulation with many Possibilities trying to be near to reality. Using XML, Python an OpenGL to make it useable on many OS. And also beeing an simulation taht can be so realistic that ist could be used for research (maybe).
    Downloads: 1 This Week
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  • 20
    vcd2svg can parse Value Change Dump (VCD) files and draw an impulse diagram using Scalable Vector Graphics (SVG). It works together with the GHDL open-source simulator.
    Downloads: 0 This Week
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  • 21
    This program allows you to create a transmission hologram using just a computer, a laser-printer, and an overhead transparency. This hologram will behave like one created using a laser and can be projected or viewed with a point source.
    Downloads: 5 This Week
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  • 22
    Ascape
    A framework and runtime environment for exploring agent-based models designed to support the definition of models using an expressive, high-level and extensible Java API and to support the exploration of these models in both interactive and batch mod
    Downloads: 0 This Week
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  • 23
    Please note: there is a new version of this project here: http://code.google.com/p/repastcity/ I'll keep this project alive but it wont be updated. A simple Repast Simphony project that demonstrates how to create small city using real GIS data. The city has houses and some agents who travel around the road network from house to house. Not affiliated with Repast Simphony.
    Downloads: 0 This Week
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  • 24
    using various methods to approximate objects interact under forces such as gravity
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  • 25
    This is a program for numerical solution of Euler equations of compressible flows using discontinuous galerkin method. The code is written on top of the deal.II finite element library. Code has been moved to https://github.com/cpraveen/dflo
    Downloads: 0 This Week
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