Showing 223 open source projects for "model-builder"

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  • 1
    Dynamic Linkage

    Dynamic Linkage

    Dynamic Linkage Social Aggregation Model

    This project will create a user-friendly modeling system for studying animal social aggregations. The model codifies the a new hypothesis that the animal's state, kinematics, and the group's emergent properties are dynamically linked together, with each one affecting the others. The model will be constructed using Object-Oriented MatLab.
    Downloads: 0 This Week
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  • 2

    TdhNet

    Free Hydraulic Model for Water Systems

    Summary of Features: FREE (no ads, no time limitations) Run on MS Windows or Linux Unlimited Network Size Unlimited ID Size (for all entities) Database storage and querying for input data and model results Contours for displaying model results Graphical data entry Attachable, searchable notes Epanet file compatibility
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  • 3
    This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
    Downloads: 0 This Week
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  • 4
    abumpack

    abumpack

    Fortran library with the Abaqus user material subroutines UMAT/VUMAT

    ...Linear elastic, isotropic hardening plasticity, Gurson-Tvergaard-Needleman (GTN), Rousselier constitutive models are provided. Quote this code as: A. Shterenlikht, N. A. Alexander, Levenberg-Marquardt vs Powell's dogleg method for Gurson-Tvergaard-Needleman plasticity model, Computer Methods in Applied Mechanics and Engineering 237-240:1-9 (2012). DOI: http://dx.doi.org/10.1016/j.cma.2012.04.018
    Downloads: 1 This Week
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  • 5

    Kinetic Model Builder

    GUI for building, simulating and optimizing kinetic models.

    A 3D graphical interface for building, simulating and optimizing Markov kinetic models in response to user defined time dependent stimuli. Models can be represented as either states and connecting transitions or interacting allosteric elements (see http://dx.doi.org/10.1085/jgp.201411183). Model parameters can be optimized by fitting model responses to user data. Optional user defined constraint equations for model parameters are parsed with EigenLab (https://github.com/marcel-goldschen-ohm/EigenLab). Convenient simulation and summarization across 2-dimensional sets of stimulus conditions makes constructing stimulus-response curves incredibly simple. ...
    Downloads: 1 This Week
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  • 6
    KMC-KaiC

    KMC-KaiC

    Kinetic Monte Carlo simulation of the in-vitro Kai Circadian clock

    ...This makes it possible to run the model at thermodynamic equilibrium. This version of the model can be downloaded under KMC_KaiC_Rev.zip. If you like to use our model for your own research, please cite our PLoS Computational Biology paper.
    Downloads: 0 This Week
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  • 7
    CoSMoSim

    CoSMoSim

    Visual & persistent families of models for CA, DEVS, and Statecharts

    CoSMoSim offers an integrated framework for model development, simulation, & experimentation. Its unified logical, visual, and persistence framework supports specifying families of parallel CA, DEVS, Statecharts, and XML-Schema models (see DEVS-Suite simulator).
    Downloads: 0 This Week
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  • 8

    diauxic growth model ensemble

    An ensemble of models showing diauxic growth behavior

    An ensemble of mathematical model is presented that all show diauxic growth behaviour of a bacterial culture. Carbon catabolite repression (CCR) is the main mechanism controlling carbohydrate uptake in bacteria, and therefore also controlling whether or not different carbon sources are metabolized in parallel or sequentially. Although described as a paradigm of the regulation of bacterial metabolism, the underlying mechanisms remain controversial.
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  • 9
    C++ Standard Airline IT Object Library
    That project aims at providing a clean API, and the corresponding C++ implementation, for the basis of Airline IT Business Object Model (BOM), ie, to be used by several other Open Source projects, such as RMOL, Air-Sched, Travel-CCM, OpenTREP, etc.
    Downloads: 0 This Week
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  • 10

    GenCodeGenerator

    C++ class to generate biologically plausible genetic codes

    ...By default, the class "GeneticCode" generates alternative genetic codes, with the reqirement of block structure, and, optionally, with the assumption of stereochemical or biosynthetic models (to impose the assumption of the adaptive model, simply filter the codes using the error_cost() function). See Appendix in Makukov & shCherbak (2017) for the description of the algorithm. The code requires Qt 5. To compile the provided example, run 'qmake' to produce the Makefile, and then run 'make' to compile the executable file. License: Public Domain.
    Downloads: 0 This Week
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  • 11

    Political economy library

    Political economy simulation toolkit

    Political economy library is a set of classes and accompanied tools for simulation of economy based on employment by companies, production of goods and consumption - EPC model. Actually it includes market-based model for research of the effects of Tobin tax. The library is based on Zarja library.
    Downloads: 0 This Week
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  • 12
    Analog Insydes is a Mathematica toolbox for symbolic analysis of analog electronic circuits. This project provides a set of free add-ons to Analog Insydes, including a Java front-end and a native netlister for Cadence's Analog Design Environment (ADE).
    Downloads: 0 This Week
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  • 13
    The Virtual Geometry Model (VGM) provides abstract interfaces to geometry objects and functions for conversion between supported geometry formats (Geant4, Root, GDML, AGDD).
    Downloads: 0 This Week
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  • 14
    optpack

    optpack

    FE simulation based automatic global optimisation in modern Fortran

    A collection of Fortran 2003, 90 and 77 routines, modules and programs for automatic simulation based global constrained optimisation. The initial application is for FE simulation of elasto-plastic buckling of steel rods aimed at tuning the hardening model. Unix shell scripts are used extensively. High concurrency is achieved with parallel multi-start global search and with parallel MPI FE. Powell's BOBYQA or LINCOA are used (not included in this package). Automatic mesh generation of 3D cylinders is provided + automatic boundary conditions, all via Fortran and shell scripting.
    Downloads: 0 This Week
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  • 15

    Cambridge Rocketry Simulator

    Simulate high power rocket flights with splash down plots

    This software allows you perform six degree of freedom simulations of High Power Rocket (HPR) and model rocket flights. Parachute descent is also simulated. 3D flight trajectories are produced as well as detailed tabular flight data. Running in Monte Carlo mode allows generates multiple possible flight paths and splash down plots, indicating the probability of landing in an area. Peer-reviewed publication in the Journal of Open Research Software (JORS) http://doi.org/10.5334/jors.137 "Cambridge Rocketry Simulator – A Stochastic Six-Degrees-of-Freedom Rocket Flight Simulator"
    Downloads: 5 This Week
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  • 16
    ETFOMM (Enhanced Transportation Flow Open-source-simulation Microscopic Model) is sponsored by a US DOT SBIR Program. The objective of the project is to establish a transportation flow simulation software program and its Application Program Interface. ETFOMM can be used as a DLL as a substitute for CORSIM in the TSIS package. It is compatible with TRAFED and TRAFVU. ETFOMM can also be used as a separate executable from a Windows or Linux command line.
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  • 17

    Advanced Simulation Library

    Free multiphysics simulation software package

    ...Its computational engine is based, among others, on the Lattice Boltzmann Methods (http://en.wikipedia.org/wiki/Lattice_Boltzmann_methods) and is written in OpenCL (http://en.wikipedia.org/wiki/OpenCL) which enable extraordinarily efficient deployment (http://asl.org.il/benchmarks) on a variety of massively parallel architectures, ranging from inexpensive FPGAs, DSPs and GPUs up to heterogeneous clusters and supercomputers. The engine is hidden entirely behind C++ classes, so that no OpenCL knowledge is required from application programmers. ASL can be utilized to model various coupled physical and chemical phenomena and employed in a multitude of fields: computational fluid dynamics, virtual sensing, industrial process data validation and reconciliation, image-guided surgery, computer-aided engineering, high-performance scientific computing, etc..
    Downloads: 0 This Week
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  • 18
    MicroModelicaVirtualNodes
    Virtual Nodes Parallelization for MicroModelica models. This tool performs Virtual Nodes Parallelization on a given MicroModelica model for being simulated in QSS Solver. The objective is to reduce the error introduced by simulating large-scaled models in parallel on QSS Solver simulating tool. This is done through redundant computations on certain state variables of the model. These redundant computations are called Virtual Nodes.
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  • 19

    cupSODA

    Deterministic simulator of mass-action based models

    cupSODA is a simulator of biological systems that exploits the remarkable memory bandwidth and computational capability of GPUs. cupSODA allows to efficiently execute in parallel large numbers of simulations, which are usually required to investigate the emergent dynamics of a given biological system under different conditions. cupSODA works by automatically deriving the system of ordinary differential equations from a reaction-based mechanistic model, defined according to the mass-action kinetics, and then exploiting the numerical integration algorithm, LSODA
    Downloads: 0 This Week
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  • 20
    MGSyn

    MGSyn

    MGSyn - Automatic Synthesis for Industrial Automation

    MGSyn (Model, Game, Synthesis) is an open-source tool which integrates game-based synthesis into model-driven development for industrial control and automation. It is served for research and educational purposes. MGSyn has been originally developed by Department of Informatics (Unit 6), TU München and fortiss GmbH and is now maintained by fortiss GmbH.
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  • 21
    pybrn is a Python package for the analysis of biochemical reaction networks. It provides basic model handling capabilities, import from SBML, analysis of conservation relations, steady state computation and model simulation.
    Downloads: 0 This Week
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  • 22

    bta-image-model

    A simple approach to modelling images provided by BTA 6-m telescope

    This is a simple image modelling soft for 6-m telescope BTA with mirror aberrations and masking (to model hartnmannograms).
    Downloads: 0 This Week
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  • 23

    runjags

    The 'runjags' R package and standalone JAGS extension module

    This package provides high-level interface utilities for MCMC models via Just Another Gibbs Sampler (JAGS), facilitating the use of parallel (or distributed) processors for multiple chains, automated control of convergence and sample length diagnostics, and evaluation of the performance of a model using drop-k validation or against simulated data. Template model specifications can be generated using a standard lme4-style formula interface to assist users less familiar with the BUGS syntax. A JAGS extension module provides additional distributions including the Pareto family of distributions, the DuMouchel prior and the half-Cauchy prior.
    Downloads: 0 This Week
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  • 24
    MF-OWHM | MODFLOW OWHM

    MF-OWHM | MODFLOW OWHM

    Simulation, analysis, and management of the movement of water

    ...For current download, source, and information please go to: https://code.usgs.gov/modflow/mf-owhm ----------------------------------------------------------------------------------------------------------- The One-Water Hydrologic Flow Model (MODFLOW-OWHM, One-Water) is an integrated hydrologic flow (IHM) model that is an enhanced fusion of multiple MODFLOW (MF) versions. While maintaining compatibility with existing MF versions, MF-OWHM includes: linkages for coupled heads, flows, and deformation; facilitation of self-updating models, additional observation and parameter options for higher-order calibrations; and redesigned code for faster simulations. ...
    Downloads: 7 This Week
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  • 25

    GMES

    GMES is a free Python package for FDTD electromagnetic simulations.

    GMES is a free finite-difference time-domain (FDTD) simulation Python package developed at GIST to model photonic devices. Its features include simulation in 1D, 2D, and 3D Cartesian coordinates, distributed memory parallelism on any system supporting the MPI standard, portable to any Unix-like system, variuos dispersive ε(ω) models, CPML absorbing boundaries and/or Bloch-periodic boundary conditions, and arbitrary material and source distributions.
    Downloads: 0 This Week
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