Open Source Linux Simulation Software - Page 16

A high-performance simulation package for sampling the chemical and reaction-diffusion master equations. Primarily intended for running stochastic simulations of microbial cells.

Elastic network models (ENMs) have been shown to generate the dominant functional equilibrium motions of biomolecules quickly and efficiently. MAVEN simplifies ENM generation, allows for diverse models to be used, and facilitates useful analyses.

MBDyn_sim_suite is a collection of free pre&post-processing tools and simulation models for the open-source multi-body analysis software MBDyn forming a general purpose simulation environment for structural dynamics with an emphasis on wind turbines.

MGSyn (Model, Game, Synthesis) is an open-source tool which integrates game-based synthesis into model-driven development for industrial control and automation. It is served for research and educational purposes. MGSyn has been originally developed by Department of Informatics (Unit 6), TU München and fortiss GmbH and is now maintained by fortiss GmbH. The software is released under the GNU General Public License Version 3.0 (GPLv3). Please download the tutorial for step-by-step instructions on installing and using the tool. It is advised to use 32-bit version (Eclipse) associated in the "MGSyn supplementary files", as the 64-bit version will by default demand huge memory, which may lead to Java exceptions.

The Mobility Open Architecture Simulation and Tools (MOAST) framework aids in the development of autonomous robots. It includes an architecture, control modules, interface specs, and data sets and is fully integrated with the USARSim simulation system.

MapSim is a simulation engine for System Dynamics. It provides a .NET library that works on Windows and under Mono on Linux. A simple GUI tool is provided too. MapSim uses its own modeling language described in the reference manual.

A software can view Ovation Control Builder SVG files, and support some useful functions.

NWFET-Lab: Nanowire device simulation package. Copyright (c) 1995-2013 by Jose Maria Castelo and Klaus Michael Indlekofer. All rights reserved. Note: Special restrictions apply. See disclaimers below and within the distribution. (We are not affiliated in any way with companies/persons mentioned above. All brand names and trademarks are property of their respective owners.)

OOPS means Open Protein Simulator, it is a program designed to serve as a test bed for different algorithms for protein folding, dynamics and structure prediction. OOPS is based on a plugin architecture that makes it highly modular and extensible.

This is a basic implementation of (1G) Ethernet Passive Optical Network (EPON) for OMNet++ 4.1. OLT and ONU modules are provided. MPCP protocol has been implemented to assign LLIDs dynamically based on a global service configuration module. Service differentiation is based on 802.1Q VLANs (included). Basic implementation for both polling and non-polling DBAs is included (fixed allocation per ONU in both cases). An example .ned for each case can be found under "PON/simulations" folder.

OpenSIMPLY is an open source project for simulation modeling in Delphi, Lazarus, Free Pascal. Download OpenSIMPLY at opensimply.org The project is free computer simulation software based on discrete-event approach. OpenSIMPLY is a science software with very high simulation performance. So, the simulation results can be obtained much faster. The project is suitable for people with any modeling experience, and can be used for both science and education. Some application of this modeling software are: - traffic simulation - network simulation, - emergency and evacuation ways simulation and much more. This simulation tool runs in Windows and Linux, on 32-bit and 64-bit platforms, as a GUI or console (terminal) application. Write the model only once, simulate anywhere. Videos on installing OpenSIMPLY for different IDEs and operating systems : https://www.youtube.com/playlist?list=PLnyWoktGqA

OpenVLAB is an open source integrated framework for the numerical simulation of fluid flows (CFD) based on the resolution of Navier-Stokes equations. It is designed for analysis, design & optimization on airfoils, wings, wind-turbine, and much more..

OpenWave is a educational wave Simulator.

Pamvotis is a Wireless LAN Simulator for all the current physical layer extentions of the IEEE 802.11 (IEEE 802.11 a/b/g) standard and for the IEEE 802.11e Draft for Quality of Service in WLANs.

PerMoTo is a Performance Modelling Tool suite for decision support in the capacity and performance management of distributed transaction processing systems based on Queueing Theory and Discrete Event Simulation.

Briefly said, PetriNetExec is an open-source Java library which allows you to embed Petri Nets into your Java application. Using PetriNetExec you can define places and transitions, connect them using arcs and inhibitors, define the initial marking and then fire events and see how tokens flow into the network. * PetriNetExec does not provide a GUI for editing the network nor will it provide in the near future. That is not really a feature :-) but to those of you able to cope with this news I suggest to read further; * Petri Nets are created with PetriNetExec by writing Java code and using the provided API; * PetriNetExec provides a simple yet powerful callback mechanism allowing you to actually do something when events are fired and the network status is changing. * PetriNetExec is embeddable into your Java application. This means that you can build your own application and add Petri Nets into it. * PetriNetExec is open-source.

Photonics is a photon tracking Monte Carlo package, which calculates photon flux and time distributions in a heterogeneous medium surrounding a light source. The propagation medium and detector and light sources are highly customizable.

PyBact is an open source software written in Python for Bacterial Identification. The software generates simulated data matrix which accurately represents the probabilistic positive/negative results of the tested biochemical test.

This project is a complete cross-platform (Windows, Linux) framework for Evolutionary Computation in pure python. See the project site at http://pyevolve.sourceforge.net or the blog at http://pyevolve.sourceforge.net/wordpress

QDC (quick direct-method controlled) is an optimized exact implementation of the Gillespie's direct-method. It is designed for biochemical simulations when there is the need of dynamic parameters whose values can change during the simulation.

Quan is designed to model physical quantities in C++ programs. Advantages include automated dimensional analysis checking, automatic unit conversions, self documentation of code.

This software accompanies the textbook "Quantum Wells, Wires and Dots" (4th Edition), Paul Harrison and Alex Valavanis, Wiley, Chichester (2015). It is adapted (by the same authors) from code that was originally supplied on a CD with the first edition of the book [1] and is now made available under the GPL3 license. In brief, we encourage everyone to use the software in your studies and research, to study and modify the source-code and to share it widely. However, you are not permitted to include any of our code in a closed-source project.

RANGE: produce random genetic transcription networks in the NEMO language, which when compiled outputs models in Systems Biology Markup Language. Generate synthetic microarray data, or use NEMO alone to SBML-ize a network, or visualize it in cytoscape.

Im Simulator können Registermaschinenprogramm geschrieben, gespeichert und ausgedruckt werden. Der Simulator akzeptiert Registernamen, relative Sprünge und Sprünge zu Labels.

RSSceSim is a simple and easy to extend simulation tool for reputation models that can be used for testing, comparing and benchmarking reputation system metrics under specific scenarios.