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The Modular System for Shelves and Coasts (MOSSCO) is a coupling framework for Earth System Models. It helps users to integrate their own numerical models with other developments.
Quick Start:
git clone git://git.code.sf.net/p/mossco/setups mossco-setups
git clone git://git.code.sf.net/p/mossco/code mossco-code
cd mossco-code
cat QuickStart.md
or read online https://sf.net/p/mossco/code/ci/master/tree/QuickStart.md
Beware: this is alpha software, expect...
Advanced numerical instruments: adaptive meshing, FE methods, solvers
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SMMP (Simple Molecular Mechanics for Proteins) is a program library for protein simulations with an emphasis on advanced Monte Carlo algorithms. It includes various force fields to calculate the energy of a protein and protein-protein interactions.