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RED searches and deletes empty directories recursively below a given start folder and shows the result in a well arranged tree. Further you can create some custom rules for keeping and deleting folders. Empty files in directories can also be ignored.
HashCatalog is a program that can find duplicate files in one or more folders, or between 2 lists of one or more folders. HashCatalog can also create an xml database file containing a listing of files with hashes.