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amilab is a tool for image processing that includes its own scripting language, and an interface for visualizing 2d/3d images and 3d surfaces. Its main application is medical image processing.
A suite of statistically-based programs for inferring joint sequence-structural determinants of protein functional specificity written in C/C++ within a linux environment.
lilpM32 is a MIPS-like processor designed in Logisim, assembler program and documentation for them.
Complete assembler and fully functional instruction set with I/O and subroutines features allow to write full-blown complicated programs.
A strong, yet minimalistic Math-oriented Programming Language (MML) providing an easy-to-use console and a command-line script interpreter, targetted towards fast calculations for extremely big numbers, and bundled with a number of math libraries.
MGFp is open parser implementation for the Mascot Generic Format (MGF). It uses bison/flex to define a formal grammar and provides the necessary C++ adapter classes. The software is provided under a BSD license.
Development on SF.net has ceased. You can find the project at http://kirchnerlab.github.com/libmgf/
Hierarchical VCD Viewer is new trace file viewer. It's based on Qt 3.3.4 (migrating to Qt 4.1) graphic library and its main feature is to provide a hierarchical view of VCD trace file.
Phight - a phylogeny tree building program
Currently, it supports Likelihood method and distance method. This program will includes diagnostic function as a special feature.
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CHIMP aims to provide a complete suite of tools for the investigation and modeling of chemical systems. It currently is able to parse chemical reaction mechanisms and run kinetic Monte Carlo simulations on the reacting system.