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GenoCline is a free Java software for genetic cline analysis
Identification of clines from allele frequency or genome-wide databases. Angular transformation. Sigmoid function.
Parameterization of a cline: orientation, Pearson’s product-moment correlation coefficient, linear and sigmoid regression and coefficient of determination. Graphical representation of the cline. Confidence limits.
Spatial autocorrelation. Moran's index.
Isolation by distance. Exponential regression. Correlation Fst/Distance.
Centroid method.
Cline's expected vs. predicted...
Linear Program Solver (Solvexo) is an optimization package intended for solving linear programming problems. The main features of the Solvexo are:
· Solvexo solver is based on the efficient implementation of the simplexmethod (one or two phases);
· Solvexo provides not only an answer, but a detailed solution process as a sequence of simplex matrices, so you can use it in studying (teaching) linear programming
...A fast parallel implementation of the network simplexmethod, and some full-fledged parallel/distributed MIP solvers will be added in the next version. In general, emphasis is given in improving the efficiency of the algorithms in shared-memory models via java threads, since multi-core machines are so wide-spread today.
JMCAD is an program for the modeling and simulation of complex dynamic systems. This includes the ability to construct and simulate block diagrams. The visual block diagram interface offers a simple method for constructing, modifying and maintaining complex system models. The simulation engine provides fast and accurate solutions for linear, nonlinear, continuous time, discrete time, time varying and hybrid system designs. With JMCAD, users can quickly develop software or "virtual" prototypes of systems or processes to demonstrate their behavior prior to building physical prototypes.
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Log-linear analysis (data modelling) for high-dimensional data
===== Project moved to https://github.com/fpetitjean/Chordalysis =====
Log-linear analysis is the statistical method used to capture multi-way relationships between variables. However, due to its exponential nature, previous approaches did not allow scale-up to more than a dozen variables.
We present here Chordalysis, a log-linear analysis method for big data. Chordalysis exploits recent discoveries in graph theory by representing complex models as compositions of triangular structures, also known as chordal graphs. ...
Linear Program Solver (LiPS) is an optimization package oriented on solving linear, integer and goal programming problems.
The main features of LiPS are:
● LiPS is based on the efficient implementation of the modified simplexmethod that solves large scale problems.
● LiPS provides not just an answer, but a detailed solution process as a sequence of simplex tables, so you can use it for studying/teaching linear programming
Java Api to manipulate simple on data of Matrix Type
Java Api to manipulate simple on data of Matrix Type.
There is lot of usefull methods like resize, insert , remove, sort and lot of other methods. Usefull methods to manipulate with diagonals. For example you can create block diagonal matrix.
There is lot of usefull methods to manipulate on mathematic matrix also, like determinant , norm , minor , cofactor , solveLienarSystem , arithmetic operations also and lot more.
Simplex-in-PHP are PHP scripts that solve small linear programming and integer linear programming problems executing the simplexmethod step by step, printing the tableau and drawing the graphical analysis. Useful for students in Operational Research
Its an Eclipse 3.5 Plugin.
It can be used to find linear paths for unit testing of any method.
The linear path covers all the child methods and till leaf level of the hierarchy.
The packages which should be covered in the path can be controlled.
Java library that implements linear algebra operations: matrix operations (addition, substraction, multiplication, transposing, determinant of matrix , inversion, rank of matrix); linear equations system solving.
reMIND is a project developed at Linköpings University in Sweden. It aims to ease optimizations of resource usage in factories / production lines. To optimize the models it uses an external linear optimizer.The method is based on MILP(Mix Int Line Prog)