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Showing 89 open source projects for "searching"
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CGAL
The Computational Geometry Algorithms Library
...CGAL features a great range of data structures and algorithms, including Voronoi diagrams, cell complexes and polyhedra, triangulations, arrangements of curves, surface and volume mesh generation, spatial searching, alpha shapes, geometry processing, and many more. The use of these result in beautiful, visually complex and accurate representations. -
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Saladict
Pop-up dictionary and page translator with multiple search modes
All-in-one professional pop-up dictionary and page translator which supports multiple search modes, page translations, new word notebook and PDF selection searching. Saladict supports mixed use of multiple search modes. Whether it be single-click, double-click, pop-up icon, hovering or keyboard shortcuts, you name it. The combination of dictionaries is dynamically adjusted according to search text and Saladict profile. Although Saladict is built for looking up English words, it also supports many other languages. ... -
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Laravel Translation Manager
Manage Laravel translation files
Laravel Translation Manager is a package that adds a web-based UI and database-backed workflow for managing Laravel translation files. Instead of replacing Laravel’s built-in translation system, it imports your lang PHP/JSON files into a database so you can view, search, and edit keys and values from a browser. Once translations are updated, you can export them back to flat files so your app continues to use the standard Laravel translation loader. This workflow is especially helpful when... -
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Physical Symbolic Optimization (Φ-SO)
Physical Symbolic Optimization
Physical Symbolic Optimization (Φ-SO) - A symbolic optimization package built for physics. Symbolic regression module uses deep reinforcement learning to infer analytical physical laws that fit data points, searching in the space of functional forms. -
Ship Agents FasterGemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
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nmrshiftdb2 is a NMR database (web database) for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties. The nmrshiftdb2 software is open source, the data is published under an open content license. The core of nmrshitdb2 are fully assigned spectra with raw data and peak lists (we have pure peak lists as well). Those datasets are peer reviewed by a board of reviewers. The project is supported by a scientific advisory board. nmrshiftdb2 is part of the NFDI4Chem initiative (https://nfdi4chem.de/) and will provide a component for a curated repository there. ...
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libadb
Astronomical Database
libadb is an astronomical catalog management library desgined to provide fast access to astronomical object data. -
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refbase - Web Reference Database
Online bibliographic manager for research groups. Zotero-compatible.
refbase is a web-based bibliographic manager which can import and export references in various formats (including BibTeX, Endnote, MODS XML, and OpenOffice). It can make formatted lists of citations and offers powerful searching, rich metadata, and RSS. -
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PronunDict_French
a pronunciation dictionary of French
PronunDict for French is both a reverse phonetic dictionary (searching by pronunciation) and a standard one to search by spelling. Pronunciation is transcribed with IPA symbols. It runs on Windows, and should also work with Wine on Linux and macOS. Acknowledgement: This app uses one external French dictionary (bundled with it) by Universite du Maine, France. Warning: There might be some errors in the dictionary entries. -
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PronunDict
a pronunciation dictionary of American English
PronunDict is both a reverse phonetic dictionary (searching by pronunciation) and a standard one to search by spelling. Pronunciation is transcribed with IPA symbols. It runs on Windows, and should also work with Wine on Linux and macOS. NEW PronunDict for French project page! https://sourceforge.net/projects/pronundict-french/ Acknowledgement: This app uses two external dictionaries (bundled with it): 1. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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Comet MS/MS search engine
Comet open source tandem mass spectrometry (MS/MS) search engine.
September 2021: the code repository has migrate to https://github.com/UWPR/Comet Comet is an open source tandem mass spectrometry (MS/MS) sequence database search engine. It identifies peptides by searching MS/MS spectra against sequences present in protein sequence databases. Comet currently exists as a simple Windows or Linux command line binary that only does MS/MS database search. Supported input formats are mzXML, mzML, ms2, and Thermo RAW files. Supported output formats are tab-delimited text, Percolator pin, SQT, and pepXML Documentation and project website: http://comet-ms.sourceforge.net -
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DynaQ
Innovative text document search. http://dynaq.opendfki.de for details.
The goal of DynaQ is to develop an inquiry system to explore the personal information space, supporting you with the searching paradigm 'orienteering'. DynaQ is a (desktop)search engine with enhanced functionality for file, email and blog search. Look at our GitLab homepage for sourcecode and documentation: http://dynaq.opendfki.de -
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MSP2MGF
Convert MSP files to MGF files - Only you know why
MSP2MGF processes MSP data files (NIST standard text files for searching) It: converts MSP data files into MGF files (mascot generic format)., produces a new file with the same name as your input file's, allows you to change the mapping of MGF fields into MGF fields, has a command line interface so you can pass files in programatically. You: either drag and drop MSP files onto the window, or pass filenames though a command line argument. -
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NOVA
Analysis and visualization of complexome profiling data.
...Several hierarchical clustering algorithms (e.g., single linkage, average linkage, Wards linkage), different distance measures (e.g., Euclidean distance, Manhattan distance, Pearson distance), and various normalization techniques are implemented. Many additional functions like zooming, searching for proteins, image export, and automatic file format recognition support intuitive handling for biologists. Giese, et al. NOVA: a software to analyze complexome profiling data. Bioinformatics, 2015, 31(3): 440-441 -
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QtiPlot is a user-friendly, platform independent data analysis and visualization application similar to the non-free Windows program Origin.
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Peak List 2 MSP
Simple peak list to MSP file converter
Peak List 2 MSP takes your ascii mass/intensity pair list (or lists) and swaps them into MSP format (NIST standard text files for searching). It: takes lists from the clipboard (or drag and drop), sorts them by mass, normalises intensities, rejects below a cut off (that you define), adds MSP headers, puts the result back in the clipboard (or a file), has a command line interface so you can pass files in programmatically, has an api so you can call it in your own code (should you feel the urge). ... -
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FTimes
A forensic system baselining, searching, and evidence collection tool
FTimes is a forensic system baselining, searching, and evidence collection tool. Its primary purpose is to gather and/or develop topographical information and attributes about specified directories and files in a manner conducive to intrusion and forensic analysis. -
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TIES
A smart search engine for medical documents
TIES (Text Information Extraction System) is a clinical text search engine that uses Natural Language Processing techniques to extract medical concepts from free text clinical reports. It provides secure de-identified access to this information and has in built collaboration tools and honest broker functionality. It is licensed for academic use under the BSD license. For commercial use please contact Nexi at http://nexihub.com *** NOTICE: this software and forum are no longer... -
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LaueTools
open source python packages for X-ray MicroLaue Diffraction analysis
LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools -
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selectseq
Get specific sequences from a FASTA or FASTQ file.
A command-line utility to manipulate biological sequences from a FASTA or FASTQ file. It can, given a list of identifiers, get only a subset of the sequences (or their complement, i.e., sequences NOT in the list). Can also get sequence number N only. Compressed sequences files are supported if readable by zcat. -
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High speed math parser
Expression evaluator for Delphi developers
...The latest changes are in TFastList class. It is the secondary class intended for fast string managment. The newest TGraph component is available as well. The new ParseUtils.FindFormula method allows searching any of possible formulas within some text. Parse components are intended for Delphi developers and perform high-speed (about 10 million evaluations per second) mathematics and boolean calculations. All components are available for Delphi 6, Delphi 7, Delphi 2005, Delphi 2006, Delphi 2007, Delphi 2009, Delphi 2010, Delphi XE, Delphi XE2, Delphi XE3, Delphi XE4, Delphi XE5, Delphi XE6, Delphi XE7, Delphi XE8, Delphi 10 Seattle, Delphi 10.1 Berlin. ... -
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CRISPR-offinder-v1-2
A CRISPR tool for user-defined protospacer adjacent motif
CRISPR/Cas system undoubtedly holds great potential for genome editing. Target site cleavage by CRISPR technology requires a protospacer adjacent motif (PAM) immediately downstream or upstream of the protospacer element to which the sgRNA binds. However, Cas9 from different types of bacteria or variant recognizes different PAM sequences. To meet the needs of different CRISPR system with specific and efficient sgRNA design, CRISPR-offinder was developed. Given an input FASTA file of the... -
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Fast Neurite Tracer
Semi-automatic neurite tracing with tera-bytes of imaging data.
...It can also process other types of light imaging data in general. FNT is designed to be * accurate in tracing (each tracing step needs your confirmation), * fast (operations using computer mouse is reduced with automatic searching), * scalable (large volume data of tera-bytes in size are supported). Other features include * the results can be exported to SWC files, * automatic detection of cycles during tracing, * support for data of multiple channels, * support for both 8-bit and 16-bit image data. -
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Chromensics - Google Chrome Forensics
A Google chrome forensics tool
The Chromensics tool is developed to read all information from chrome browser directory and present it to user, in easy readable tabular format which can be explored in descent interface without running the chrome browser. The tool will also allow you retrieve information from other chrome installation brought from different machine for analyzing. The acquired artifacts can be exported in PDF report to present it in court of law or to superiors. -Update 04/02/2017- Standardized all date... -
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This is a tool for patent searching, downloading and analyzing. Analysis focuses on patent-families, citation-networks, assignee-networks , and inventor-networks.
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Marcion
The study environment of ancient languages (Coptic, Greek, Latin)
Marcion is a software forming a study environment of ancient languages (esp. Coptic, Greek, Latin) and providing many tools and resources (dictionaties, grammars, texts). Although Marcion is focused on to study the gnosticism and early christianity, it is an universal library working with various file formats and allowing to collect, organize and backup texts of any kind. Overview of gnostic sources in Coptic language delivered with Marcion: Nag Hammadi Library; Berlin Codex; Codex...
